Files @ 21afbd2a2c01
Branch filter:

Location: EI/VirtualLeaf/src/TutorialCode/Tutorial1D/tutorial1D.cpp - annotation

21afbd2a2c01 2.2 KiB text/x-c++src Show Source Show as Raw Download as Raw
Michael Guravage
Renamed tutorial examples and added makefile, etc.

--
user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'
added doc/gpl3.txt
added doc/installation.pdf
added doc/installation.rst
added src/TutorialCode/Makefile
added src/TutorialCode/Tutorial0/Makefile
added src/TutorialCode/Tutorial0/tutorial0.cpp
added src/TutorialCode/Tutorial0/tutorial0.h
added src/TutorialCode/Tutorial0/tutorial0.pro
added src/TutorialCode/Tutorial1A/Makefile
added src/TutorialCode/Tutorial1A/tutorial1A.cpp
added src/TutorialCode/Tutorial1A/tutorial1A.h
added src/TutorialCode/Tutorial1A/tutorial1A.pro
added src/TutorialCode/Tutorial1B/Makefile
added src/TutorialCode/Tutorial1B/tutorial1B.cpp
added src/TutorialCode/Tutorial1B/tutorial1B.h
added src/TutorialCode/Tutorial1B/tutorial1B.pro
added src/TutorialCode/Tutorial1C/Makefile
added src/TutorialCode/Tutorial1C/tutorial1C.cpp
added src/TutorialCode/Tutorial1C/tutorial1C.h
added src/TutorialCode/Tutorial1C/tutorial1C.pro
added src/TutorialCode/Tutorial1D/Makefile
added src/TutorialCode/Tutorial1D/tutorial1D.cpp
added src/TutorialCode/Tutorial1D/tutorial1D.h
added src/TutorialCode/Tutorial1D/tutorial1D.pro
added src/TutorialCode/Tutorial2/Makefile
added src/TutorialCode/Tutorial2/tutorial2.cpp
added src/TutorialCode/Tutorial2/tutorial2.h
added src/TutorialCode/Tutorial2/tutorial2.pro
added src/TutorialCode/Tutorial3/Makefile
added src/TutorialCode/Tutorial3/tutorial3.cpp
added src/TutorialCode/Tutorial3/tutorial3.h
added src/TutorialCode/Tutorial3/tutorial3.pro
added src/TutorialCode/Tutorial4/Makefile
added src/TutorialCode/Tutorial4/tutorial4.cpp
added src/TutorialCode/Tutorial4/tutorial4.h
added src/TutorialCode/Tutorial4/tutorial4.pro
added src/TutorialCode/Tutorial5/Makefile
added src/TutorialCode/Tutorial5/tutorial5.cpp
added src/TutorialCode/Tutorial5/tutorial5.h
added src/TutorialCode/Tutorial5/tutorial5.pro
added src/perl/ChangeLog
changed src/ChangeLog
changed src/Makefile
changed src/build_models/ChangeLog
changed src/build_models/Makefile
changed src/canvas.cpp
changed src/parameter.cpp
changed src/parameter.h
changed src/pardialog.cpp
changed src/pardialog.h
changed src/perl/make_parameter_source.pl
changed src/perl/make_pardialog_source.pl
changed src/perl/make_xmlwritecode.pl
changed src/vleafmodel.h
removed doc/GPL
removed src/TutorialCode/Tutorial0/mymodel.cpp
removed src/TutorialCode/Tutorial0/mymodel.h
removed src/TutorialCode/Tutorial0/mymodel.pro
removed src/TutorialCode/Tutorial1/mymodel.cpp
removed src/TutorialCode/Tutorial1/mymodel.h
removed src/TutorialCode/Tutorial1/mymodel.pro
removed src/TutorialCode/Tutorial1A/mymodel.cpp
removed src/TutorialCode/Tutorial1A/mymodel.h
removed src/TutorialCode/Tutorial1A/mymodel.pro
removed src/TutorialCode/Tutorial1B/mymodel.cpp
removed src/TutorialCode/Tutorial1B/mymodel.h
removed src/TutorialCode/Tutorial1B/mymodel.pro
removed src/TutorialCode/Tutorial1C/mymodel.cpp
removed src/TutorialCode/Tutorial1C/mymodel.h
removed src/TutorialCode/Tutorial1C/mymodel.pro
removed src/TutorialCode/Tutorial1D/mymodel.cpp
removed src/TutorialCode/Tutorial1D/mymodel.h
removed src/TutorialCode/Tutorial1D/mymodel.pro
removed src/TutorialCode/Tutorial2/mymodel.cpp
removed src/TutorialCode/Tutorial2/mymodel.h
removed src/TutorialCode/Tutorial2/mymodel.pro
removed src/TutorialCode/Tutorial3/mymodel.cpp
removed src/TutorialCode/Tutorial3/mymodel.h
removed src/TutorialCode/Tutorial3/mymodel.pro
removed src/TutorialCode/Tutorial4/mymodel
removed src/TutorialCode/Tutorial4/mymodel.cpp
removed src/TutorialCode/Tutorial4/mymodel.h
removed src/TutorialCode/Tutorial4/mymodel.pro
removed src/TutorialCode/Tutorial5/mymodel
removed src/TutorialCode/Tutorial5/mymodel.cpp
removed src/TutorialCode/Tutorial5/mymodel.h
removed src/TutorialCode/Tutorial5/mymodel.pro
 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01
21afbd2a2c01

/*
 *
 *  This file is part of the Virtual Leaf.
 *
 *  The Virtual Leaf is free software: you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation, either version 3 of the License, or
 *  (at your option) any later version.
 *
 *  The Virtual Leaf is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License
 *  along with the Virtual Leaf.  If not, see <http://www.gnu.org/licenses/>.
 *
 *  Copyright 2010 Roeland Merks.
 *
 */

#include <QObject>
#include <QtGui>

#include "simplugin.h"

#include "parameter.h"

#include "wallbase.h"
#include "cellbase.h"
#include "tutorial1D.h"

static const std::string _module_id("$Id$");

QString Tutorial1D::ModelID(void) {
  // specify the name of your model here
  return QString( "1D: Growth, division, coloring" );
}

// return the number of chemicals your model uses
int Tutorial1D::NChem(void) { return 0; }

// To be executed after cell division
void Tutorial1D::OnDivide(ParentInfo *parent_info, CellBase *daughter1, CellBase *daughter2) {
  // rules to be executed after cell division go here
  // (e.g., cell differentiation rules)
}

void Tutorial1D::SetCellColor(CellBase *c, QColor *color) { 
  // add cell coloring rules here
	if (c->Area()/c->BaseArea()>1.8) { color->setNamedColor("blue"); }
	else { color->setNamedColor("green"); }

}

void Tutorial1D::CellHouseKeeping(CellBase *c) {
  // add cell behavioral rules here
	c->EnlargeTargetArea(par->cell_expansion_rate);
	if (c->Area() > par->rel_cell_div_threshold * c->BaseArea()) {
		c->Divide();
	}
}

void Tutorial1D::CelltoCellTransport(Wall *w, double *dchem_c1, double *dchem_c2) {
  // add biochemical transport rules here
}
void Tutorial1D::WallDynamics(Wall *w, double *dw1, double *dw2) {
  // add biochemical networks for reactions occuring at walls here
}
void Tutorial1D::CellDynamics(CellBase *c, double *dchem) { 
  // add biochemical networks for intracellular reactions here
}


Q_EXPORT_PLUGIN2(tutorial1D, Tutorial1D)
Server instance: kalli-620 This site is powered by Kallithea, which is © 2010–2022 by various authors & licensed under GPLv3. – Support