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I've repaired VLeaf's batch mode to work with dynamic model loading. There is a new option now "-m" that allows you to supply a model name.
For example:
./VirtualLeaf -l ../data/leaves/auxin_growth.xml -m libauxingrowth.so -b
or
./VirtualLeaf --leaffile ../data/leaves/auxin_growth.xml --model libauxingrowth.so --batch
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
changed src/VirtualLeaf.cpp
changed src/VirtualLeaf.pro
changed src/modelcatalogue.cpp
changed src/modelcatalogue.h
changed src/warning.cpp
For example:
./VirtualLeaf -l ../data/leaves/auxin_growth.xml -m libauxingrowth.so -b
or
./VirtualLeaf --leaffile ../data/leaves/auxin_growth.xml --model libauxingrowth.so --batch
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
changed src/VirtualLeaf.cpp
changed src/VirtualLeaf.pro
changed src/modelcatalogue.cpp
changed src/modelcatalogue.h
changed src/warning.cpp
79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e | /*
*
* $Id$
*
* This file is part of the Virtual Leaf.
*
* The Virtual Leaf is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* The Virtual Leaf is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with the Virtual Leaf. If not, see <http://www.gnu.org/licenses/>.
*
* Copyright 2010 Roeland Merks.
*
*/
#ifndef _XML_WRITE_H_
#define _XML_WRITE_H_
#include <vector>
#include <libxml/tree.h>
#include <cstring>
namespace XMLIO {
std::vector <double> XMLReadValArray(xmlNode *cur);
void XMLWriteLeafSourceCode(xmlNode *parent);
void XMLWriteReactionsCode(xmlNode *parent);
template<class For, class E> long list_index (For beg, For end, E *elem) {
long n = 0;
for (For i=beg;
i!=end;
i++) {
if (*i == elem) {
return n;
}
n++;
}
return -1;
}
}
static const char * bool_names[2] = {"true","false"};
inline const char *bool_name(bool q) { return q ? bool_names[0] : bool_names[1]; }
inline bool strtobool(const char *str) {
if (!strcmp(str, "true")) {
return true;
} else {
if (!strcmp(str, "false")) {
return false;
} else {
throw("Error in xmlwrite.cpp : strtobool(const char *str). Parameter passed other than \"true\" or \"false\".");
}
}
}
#endif
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