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854077b2d7cc
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Added first tissue growth protocol: The expanding cell.
--
user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'
added src/protocols/MyGrowthModel/Makefile
added src/protocols/MyGrowthModel/mygrowthmodel.cpp
added src/protocols/MyGrowthModel/mygrowthmodel.h
added src/protocols/MyGrowthModel/mygrowthmodel.pro
changed src/protocols/Makefile
--
user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'
added src/protocols/MyGrowthModel/Makefile
added src/protocols/MyGrowthModel/mygrowthmodel.cpp
added src/protocols/MyGrowthModel/mygrowthmodel.h
added src/protocols/MyGrowthModel/mygrowthmodel.pro
changed src/protocols/Makefile
79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 15d600891648 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 15d600891648 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 782330072e62 79f94eaa3b9e 79f94eaa3b9e 782330072e62 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 782330072e62 79f94eaa3b9e 79f94eaa3b9e 782330072e62 782330072e62 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 782330072e62 782330072e62 | /*
*
* $Id$
*
* This file is part of the Virtual Leaf.
*
* VirtualLeaf is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* VirtualLeaf is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with the Virtual Leaf. If not, see <http://www.gnu.org/licenses/>.
*
* Copyright 2010 Roeland Merks.
*
*/
#ifndef _RUNGEKUTTA_H_
#define _RUNGEKUTTA_H_
class RungeKutta {
public:
RungeKutta(void) {
kmax=kount=0;
dxsav=0.;
xp=0;
yp=0;
}
virtual ~RungeKutta() {}
void odeint(double ystart[], int nvar, double x1, double x2, double eps, double h1,
double hmin, int *nok, int *nbad);
protected:
// implement "derivs" in a derived class
virtual void derivs(double x, double *y, double *dxdy) = 0;
int kmax,kount;
double *xp,**yp,dxsav;
private:
void rkqs(double *y, double *dydx, int n, double *x, double htry, double eps,
double *yscal, double *hdid, double *hnext);
void rkck(double *y, double *dydx, int n, double x, double h, double yout[],
double *yerr);
static const double Safety;
static const double PGrow;
static const double Pshrnk;
static const double Errcon;
static const double Maxstp;
static const double Tiny;
};
#endif
/* finis */
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