Removed erroneous qmake -makefile option. MACOSX, look for gpl3.txt in ../doc directory.

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user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'
changed src/ChangeLog
changed src/Makefile
changed src/TutorialCode/Tutorial0/ChangeLog
changed src/TutorialCode/Tutorial0/Makefile
changed src/TutorialCode/Tutorial1A/ChangeLog
changed src/TutorialCode/Tutorial1A/Makefile
changed src/TutorialCode/Tutorial1B/ChangeLog
changed src/TutorialCode/Tutorial1B/Makefile
changed src/TutorialCode/Tutorial1C/ChangeLog
changed src/TutorialCode/Tutorial1C/Makefile
changed src/TutorialCode/Tutorial1D/ChangeLog
changed src/TutorialCode/Tutorial1D/Makefile
changed src/TutorialCode/Tutorial2/ChangeLog
changed src/TutorialCode/Tutorial2/Makefile
changed src/TutorialCode/Tutorial3/ChangeLog
changed src/TutorialCode/Tutorial3/Makefile
changed src/TutorialCode/Tutorial4/ChangeLog
changed src/TutorialCode/Tutorial4/Makefile
changed src/TutorialCode/Tutorial5/ChangeLog
changed src/TutorialCode/Tutorial5/Makefile
changed src/VirtualLeaf.pro
changed src/build_models/ChangeLog
changed src/build_models/Makefile

Made changes to conform to the version submitted with the Plant Physiology paper. See the individual ChangeLogs for details.

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user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'
added lib/libiconv/bin/iconv.exe
added lib/libiconv/bin/libcharset-1.dll
added lib/libiconv/bin/libiconv-2.dll
added src/gpl3.txt
changed INSTALL
changed src/ChangeLog
changed src/TutorialCode/Tutorial0/ChangeLog
changed src/TutorialCode/Tutorial0/tutorial0.pro
changed src/TutorialCode/Tutorial1A/ChangeLog
changed src/TutorialCode/Tutorial1A/tutorial1A.pro
changed src/TutorialCode/Tutorial1B/ChangeLog
changed src/TutorialCode/Tutorial1B/tutorial1B.pro
changed src/TutorialCode/Tutorial1C/ChangeLog
changed src/TutorialCode/Tutorial1C/tutorial1C.pro
changed src/TutorialCode/Tutorial1D/ChangeLog
changed src/TutorialCode/Tutorial1D/tutorial1D.pro
changed src/TutorialCode/Tutorial2/ChangeLog
changed src/TutorialCode/Tutorial2/tutorial2.pro
changed src/TutorialCode/Tutorial3/ChangeLog
changed src/TutorialCode/Tutorial3/tutorial3.pro
changed src/TutorialCode/Tutorial4/ChangeLog
changed src/TutorialCode/Tutorial4/tutorial4.pro
changed src/TutorialCode/Tutorial5/ChangeLog
changed src/TutorialCode/Tutorial5/tutorial5.pro
changed src/VirtualLeaf-install.nsi
changed src/VirtualLeaf.pro
changed src/build_models/ChangeLog
changed src/build_models/plugin_auxingrowth.pro
changed src/build_models/plugin_meinhardt.pro
changed src/build_models/plugin_test.pro
changed src/canvas.cpp
changed src/libplugin.pro
changed src/output.cpp
changed src/output.h
changed src/parameter.cpp
changed src/parameter.h
changed src/perl/ChangeLog
changed src/perl/make_parameter_source.pl
removed doc/gpl3.txt

Use Correct library path in various project files.

--
user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'
changed src/ChangeLog
changed src/VirtualLeaf.pro
changed src/build_models/ChangeLog
changed src/build_models/plugin_auxingrowth.pro
changed src/build_models/plugin_meinhardt.pro
changed src/build_models/plugin_test.pro
changed src/libplugin.pro

Reverted NULL assignments to obviate compilation warnings.

--
user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'

changed src/ChangeLog
changed src/VirtualLeaf.cpp
changed src/apoplastitem.cpp
changed src/build_models/ChangeLog
changed src/build_models/auxingrowthplugin.cpp
changed src/build_models/meinhardtplugin.cpp
changed src/build_models/testplugin.cpp
changed src/canvas.cpp
changed src/cell.cpp
changed src/cellbase.h
changed src/forwardeuler.cpp
changed src/mainbase.h
changed src/nodeitem.cpp
changed src/qcanvasarrow.h
changed src/simitembase.cpp

Renamed tutorial examples and added makefile, etc.

--
user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'
added doc/gpl3.txt
added doc/installation.pdf
added doc/installation.rst
added src/TutorialCode/Makefile
added src/TutorialCode/Tutorial0/Makefile
added src/TutorialCode/Tutorial0/tutorial0.cpp
added src/TutorialCode/Tutorial0/tutorial0.h
added src/TutorialCode/Tutorial0/tutorial0.pro
added src/TutorialCode/Tutorial1A/Makefile
added src/TutorialCode/Tutorial1A/tutorial1A.cpp
added src/TutorialCode/Tutorial1A/tutorial1A.h
added src/TutorialCode/Tutorial1A/tutorial1A.pro
added src/TutorialCode/Tutorial1B/Makefile
added src/TutorialCode/Tutorial1B/tutorial1B.cpp
added src/TutorialCode/Tutorial1B/tutorial1B.h
added src/TutorialCode/Tutorial1B/tutorial1B.pro
added src/TutorialCode/Tutorial1C/Makefile
added src/TutorialCode/Tutorial1C/tutorial1C.cpp
added src/TutorialCode/Tutorial1C/tutorial1C.h
added src/TutorialCode/Tutorial1C/tutorial1C.pro
added src/TutorialCode/Tutorial1D/Makefile
added src/TutorialCode/Tutorial1D/tutorial1D.cpp
added src/TutorialCode/Tutorial1D/tutorial1D.h
added src/TutorialCode/Tutorial1D/tutorial1D.pro
added src/TutorialCode/Tutorial2/Makefile
added src/TutorialCode/Tutorial2/tutorial2.cpp
added src/TutorialCode/Tutorial2/tutorial2.h
added src/TutorialCode/Tutorial2/tutorial2.pro
added src/TutorialCode/Tutorial3/Makefile
added src/TutorialCode/Tutorial3/tutorial3.cpp
added src/TutorialCode/Tutorial3/tutorial3.h
added src/TutorialCode/Tutorial3/tutorial3.pro
added src/TutorialCode/Tutorial4/Makefile
added src/TutorialCode/Tutorial4/tutorial4.cpp
added src/TutorialCode/Tutorial4/tutorial4.h
added src/TutorialCode/Tutorial4/tutorial4.pro
added src/TutorialCode/Tutorial5/Makefile
added src/TutorialCode/Tutorial5/tutorial5.cpp
added src/TutorialCode/Tutorial5/tutorial5.h
added src/TutorialCode/Tutorial5/tutorial5.pro
added src/perl/ChangeLog
changed src/ChangeLog
changed src/Makefile
changed src/build_models/ChangeLog
changed src/build_models/Makefile
changed src/canvas.cpp
changed src/parameter.cpp
changed src/parameter.h
changed src/pardialog.cpp
changed src/pardialog.h
changed src/perl/make_parameter_source.pl
changed src/perl/make_pardialog_source.pl
changed src/perl/make_xmlwritecode.pl
changed src/vleafmodel.h
removed doc/GPL
removed src/TutorialCode/Tutorial0/mymodel.cpp
removed src/TutorialCode/Tutorial0/mymodel.h
removed src/TutorialCode/Tutorial0/mymodel.pro
removed src/TutorialCode/Tutorial1/mymodel.cpp
removed src/TutorialCode/Tutorial1/mymodel.h
removed src/TutorialCode/Tutorial1/mymodel.pro
removed src/TutorialCode/Tutorial1A/mymodel.cpp
removed src/TutorialCode/Tutorial1A/mymodel.h
removed src/TutorialCode/Tutorial1A/mymodel.pro
removed src/TutorialCode/Tutorial1B/mymodel.cpp
removed src/TutorialCode/Tutorial1B/mymodel.h
removed src/TutorialCode/Tutorial1B/mymodel.pro
removed src/TutorialCode/Tutorial1C/mymodel.cpp
removed src/TutorialCode/Tutorial1C/mymodel.h
removed src/TutorialCode/Tutorial1C/mymodel.pro
removed src/TutorialCode/Tutorial1D/mymodel.cpp
removed src/TutorialCode/Tutorial1D/mymodel.h
removed src/TutorialCode/Tutorial1D/mymodel.pro
removed src/TutorialCode/Tutorial2/mymodel.cpp
removed src/TutorialCode/Tutorial2/mymodel.h
removed src/TutorialCode/Tutorial2/mymodel.pro
removed src/TutorialCode/Tutorial3/mymodel.cpp
removed src/TutorialCode/Tutorial3/mymodel.h
removed src/TutorialCode/Tutorial3/mymodel.pro
removed src/TutorialCode/Tutorial4/mymodel
removed src/TutorialCode/Tutorial4/mymodel.cpp
removed src/TutorialCode/Tutorial4/mymodel.h
removed src/TutorialCode/Tutorial4/mymodel.pro
removed src/TutorialCode/Tutorial5/mymodel
removed src/TutorialCode/Tutorial5/mymodel.cpp
removed src/TutorialCode/Tutorial5/mymodel.h
removed src/TutorialCode/Tutorial5/mymodel.pro

Moved the Windows LIBXML2, LIBICONV and LIBZ libraries into the
destribtion, and changed the various project files accordingly.

--
user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'
added lib/libiconv/include/iconv.h
added lib/libiconv/include/libcharset.h
added lib/libiconv/include/localcharset.h
added lib/libiconv/lib/charset.alias
added lib/libiconv/lib/libcharset.la
added lib/libiconv/lib/libiconv.la
added lib/libiconv/share/doc/libiconv/COPYING
added lib/libiconv/share/doc/libiconv/COPYING.LIB
added lib/libiconv/share/doc/libiconv/NEWS
added lib/libiconv/share/doc/libiconv/NOTES
added lib/libxml2/include/libxml/DOCBparser.h
added lib/libxml2/include/libxml/HTMLparser.h
added lib/libxml2/include/libxml/HTMLtree.h
added lib/libxml2/include/libxml/SAX.h
added lib/libxml2/include/libxml/SAX2.h
added lib/libxml2/include/libxml/c14n.h
added lib/libxml2/include/libxml/catalog.h
added lib/libxml2/include/libxml/chvalid.h
added lib/libxml2/include/libxml/debugXML.h
added lib/libxml2/include/libxml/dict.h
added lib/libxml2/include/libxml/encoding.h
added lib/libxml2/include/libxml/entities.h
added lib/libxml2/include/libxml/globals.h
added lib/libxml2/include/libxml/hash.h
added lib/libxml2/include/libxml/list.h
added lib/libxml2/include/libxml/nanoftp.h
added lib/libxml2/include/libxml/nanohttp.h
added lib/libxml2/include/libxml/parser.h
added lib/libxml2/include/libxml/parserInternals.h
added lib/libxml2/include/libxml/pattern.h
added lib/libxml2/include/libxml/relaxng.h
added lib/libxml2/include/libxml/schemasInternals.h
added lib/libxml2/include/libxml/schematron.h
added lib/libxml2/include/libxml/threads.h
added lib/libxml2/include/libxml/tree.h
added lib/libxml2/include/libxml/uri.h
added lib/libxml2/include/libxml/valid.h
added lib/libxml2/include/libxml/xinclude.h
added lib/libxml2/include/libxml/xlink.h
added lib/libxml2/include/libxml/xmlIO.h
added lib/libxml2/include/libxml/xmlautomata.h
added lib/libxml2/include/libxml/xmlerror.h
added lib/libxml2/include/libxml/xmlexports.h
added lib/libxml2/include/libxml/xmlmemory.h
added lib/libxml2/include/libxml/xmlmodule.h
added lib/libxml2/include/libxml/xmlreader.h
added lib/libxml2/include/libxml/xmlregexp.h
added lib/libxml2/include/libxml/xmlsave.h
added lib/libxml2/include/libxml/xmlschemas.h
added lib/libxml2/include/libxml/xmlschemastypes.h
added lib/libxml2/include/libxml/xmlstring.h
added lib/libxml2/include/libxml/xmlunicode.h
added lib/libxml2/include/libxml/xmlversion.h
added lib/libxml2/include/libxml/xmlwin32version.h
added lib/libxml2/include/libxml/xmlwriter.h
added lib/libxml2/include/libxml/xpath.h
added lib/libxml2/include/libxml/xpathInternals.h
added lib/libxml2/include/libxml/xpointer.h
added lib/libxml2/lib/libxml2.dll
added lib/libxml2/lib/libxml2.lib
added lib/libz/include/zconf.h
added lib/libz/include/zlib.h
changed src/ChangeLog
changed src/Makefile
changed src/VirtualLeaf.pro
changed src/build_models/ChangeLog
changed src/build_models/Makefile
changed src/build_models/plugin_auxingrowth.pro
changed src/build_models/plugin_meinhardt.pro
changed src/build_models/plugin_test.pro
changed src/libplugin.pro

Removed most compilation warnings; see ChangeLogs for details.

--
user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'

changed .hgignore
changed src/ChangeLog
changed src/VirtualLeaf.cpp
changed src/apoplastitem.cpp
changed src/build_models/ChangeLog
changed src/build_models/auxingrowthplugin.cpp
changed src/build_models/meinhardtplugin.cpp
changed src/build_models/testplugin.cpp
changed src/canvas.cpp
changed src/cell.cpp
changed src/cellbase.h
changed src/forwardeuler.cpp
changed src/mainbase.h
changed src/mesh.cpp
changed src/nodeitem.cpp
changed src/output.cpp
changed src/qcanvasarrow.h
changed src/simitembase.cpp
changed src/xmlwrite.cpp

Tweaked project files to delete/regenerate parameter and pardialog files only if perl is installed. Added new top-level Makefiles. See ChangeLogs for more details.

--
user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'
added src/Makefile
added src/build_models/Makefile
added src/parameter.cpp
added src/parameter.h
added src/pardialog.cpp
added src/pardialog.h
changed .hgignore
changed src/ChangeLog
changed src/VirtualLeaf.pro
changed src/build_models/ChangeLog
changed src/libplugin.pro