EI/VirtualLeaf Changelog /src/mesh.cpp · Centrum Wiskunde & Informatica (CWI)

Changelog - /src/mesh.cpp @ 2accd83924da - showing 18 out of 18 revisions

Roeland Merks	2accd83924da	15 years ago	Some last fine-tuning Some last fine-tuning - File dialogs start from appropriate data directories - XML files contain right values for datadir - Reordered parameter dialog - Added new "make perl" heading to the makefile - Corrected segfault for batch mode user: Roeland Merks <roeland.merks@cwi.nl> branch 'default' changed data/leaves/auxin_growth.xml changed data/leaves/meinhardt_init.xml changed data/leaves/tutorial1_init.xml changed data/leaves/tutorial2_init.xml changed data/leaves/tutorial3_init.xml changed data/leaves/tutorial4_init.xml changed data/leaves/tutorial5_init.xml changed src/Makefile changed src/VirtualLeaf.cpp changed src/VirtualLeafpar.tmpl changed src/canvas.cpp changed src/canvas.h changed src/mesh.cpp changed src/mesh.h changed src/modelcatalogue.cpp changed src/modelcatalogue.h changed src/parameter.cpp changed src/parameter.h changed src/pardialog.cpp changed src/pardialog.h default
Roeland Merks	e40119cdbdb9	15 years ago	A few last updates before submitting the revised Plant Phys. paper. Corrected the invocation of TransporterDialog and added parameter 'yield_threshold' A few last updates before submitting the revised Plant Phys. paper. Corrected the invocation of TransporterDialog and added parameter 'yield_threshold' user: Roeland Merks <roeland.merks@cwi.nl> branch 'default' changed src/ChangeLog changed src/VirtualLeafpar.tmpl changed src/mesh.cpp changed src/parameter.cpp changed src/parameter.h changed src/pardialog.cpp changed src/pardialog.h changed src/wallitem.cpp default
Roeland Merks	8aaffb5565a2	15 years ago	Corrected Compactness algorithm. Added algorithms to calculate circumference of convex hull and of the whole morph/ Corrected Compactness algorithm. Added algorithms to calculate circumference of convex hull and of the whole morph/ user: Roeland Merks <roeland.merks@cwi.nl> branch 'default' default
Roeland Merks	4cb24b737683	15 years ago	merge? I tried to push my recent updates, hoping I haven't messed up things. All intermediate versions are kept anyway, right? default
Michael Guravage	15d600891648	15 years ago	In DrawCell class (VirtualLeaf.cpp) - iterate over NChem to construct info_string. Additional cleanup. In DrawCell class (VirtualLeaf.cpp) - iterate over NChem to construct info_string. Additional cleanup. -- user: Michael Guravage <michael.guravage@cwi.nl> branch 'default' changed src/ChangeLog changed src/Neighbor.cpp changed src/Neighbor.h changed src/OptionFileDialog.cpp changed src/OptionFileDialog.h changed src/UniqueMessage.cpp changed src/UniqueMessage.h changed src/VirtualLeaf.cpp changed src/VirtualLeaf.pro changed src/build_models/plugin_auxingrowth.pro changed src/build_models/plugin_meinhardt.pro changed src/build_models/plugin_test.pro changed src/canvas.cpp changed src/canvas.h changed src/cell.cpp changed src/cell.h changed src/cellbase.cpp changed src/cellbase.h changed src/cellitem.cpp changed src/cellitem.h changed src/forwardeuler.cpp changed src/forwardeuler.h changed src/infobar.h changed src/libplugin.pro changed src/mainbase.cpp changed src/mainbase.h changed src/matrix.cpp changed src/matrix.h changed src/mesh.cpp changed src/mesh.h changed src/miscq.cpp changed src/miscq.h changed src/modelcatalogue.cpp changed src/modelcatalogue.h changed src/node.cpp changed src/node.h changed src/nodeitem.cpp changed src/nodeitem.h changed src/nodeset.cpp changed src/nodeset.h changed src/output.cpp changed src/output.h changed src/parameter.cpp changed src/parameter.h changed src/pardialog.cpp changed src/parse.cpp changed src/parse.h changed src/pi.h changed src/qcanvasarrow.h changed src/random.cpp changed src/random.h changed src/rungekutta.cpp changed src/rungekutta.h changed src/simitembase.cpp changed src/simitembase.h changed src/simplugin.h changed src/sqr.h changed src/tiny.h changed src/transporterdialog.cpp changed src/transporterdialog.h changed src/vector.cpp changed src/vector.h changed src/wall.cpp changed src/wall.h changed src/wallbase.cpp changed src/wallbase.h changed src/wallitem.cpp changed src/wallitem.h changed src/warning.cpp changed src/warning.h changed src/xmlwrite.cpp changed src/xmlwrite.h default
Roeland Merks	9a40ab737a73	15 years ago	* Added functionality for numerical output (CSV) format. See functions starting with "CSV" in mesh.cpp. External code hull.cpp is responsible for convex hull calculations. * Added functionality for numerical output (CSV) format. See functions starting with "CSV" in mesh.cpp. External code hull.cpp is responsible for convex hull calculations. - ToDo: adopt menu item "File->export cell areas" so user can choose a file name or set up periodic output of numerical data. - ToDo: add parameters re: periodic numeric output to "<settings>" block of LeafML-file, so it becomes possible to set up numeric output interactively, then write the LeafML file and run the program in batch mode to retrieve periodic numeric output. * Added new functionality to plugin interface. It becomes possible to define a default LeafML init file for a plugin. It is read whenever the model plugin is loaded. - ToDo: define default LeafML files for all plugins, according to the LeafML files mentioned in the Plant Phys. tutorial. user: Roeland Merks <merks@cwi.nl> branch 'default' added src/hull.cpp added src/hull.h changed src/TutorialCode/Tutorial0/tutorial0.pro changed src/VirtualLeaf.cpp changed src/VirtualLeaf.pro changed src/build_models/auxingrowthplugin.cpp changed src/build_models/auxingrowthplugin.h changed src/canvas.cpp changed src/canvas.h changed src/mainbase.h changed src/mesh.cpp changed src/mesh.h changed src/modelcatalogue.cpp changed src/simplugin.cpp changed src/simplugin.h changed src/xmlwrite.cpp default
Michael Guravage	d4a19fde7f8d	15 years ago	Corrected several small problems with qDebug. See ChangeLogs for details. Corrected several small problems with qDebug. See ChangeLogs for details. -- user: Michael Guravage <michael.guravage@cwi.nl> branch 'default' changed doc/installation.pdf changed doc/installation.rst changed src/ChangeLog changed src/canvas.cpp changed src/mesh.cpp changed src/random.cpp changed src/wall.cpp default
Michael Guravage	d9ce329d84ae	15 years ago	Made additional formatting changes. Made additional formatting changes. -- user: Michael Guravage <michael.guravage@cwi.nl> branch 'default' changed src/VirtualLeaf.cpp changed src/canvas.cpp changed src/cell.cpp changed src/cellbase.cpp changed src/mesh.cpp changed src/modelcatalogue.h changed src/modelelement.h changed src/node.cpp changed src/parameter.cpp changed src/parameter.h changed src/pardialog.cpp changed src/pardialog.h changed src/xmlwrite.cpp default
Michael Guravage	782330072e62	15 years ago	Reformatted the source files and generally straighten up the code. Reformatted the source files and generally straighten up the code. -- user: Michael Guravage <michael.guravage@cwi.nl> branch 'default' changed src/Neighbor.cpp changed src/Neighbor.h changed src/OptionFileDialog.cpp changed src/OptionFileDialog.h changed src/UniqueMessage.cpp changed src/UniqueMessage.h changed src/VirtualLeaf.cpp changed src/apoplastitem.cpp changed src/apoplastitem.h changed src/build_models/auxingrowthplugin.cpp changed src/build_models/auxingrowthplugin.h changed src/build_models/meinhardtplugin.cpp changed src/build_models/meinhardtplugin.h changed src/build_models/testplugin.cpp changed src/build_models/testplugin.h changed src/build_models/translate_plugin.pl changed src/canvas.cpp changed src/canvas.h changed src/cell.cpp changed src/cell.h changed src/cellbase.cpp changed src/cellbase.h changed src/cellitem.cpp changed src/cellitem.h changed src/curvecolors.h changed src/data_plot.cpp changed src/data_plot.h changed src/far_mem_5.h changed src/flux_function.h changed src/forwardeuler.cpp changed src/forwardeuler.h changed src/infobar.h changed src/mainbase.cpp changed src/mainbase.h changed src/matrix.cpp changed src/matrix.h changed src/maxmin.h changed src/mesh.cpp changed src/mesh.h changed src/miscq.cpp changed src/miscq.h changed src/modelcatalogue.cpp changed src/modelcatalogue.h changed src/modelelement.h changed src/node.cpp changed src/node.h changed src/nodeitem.cpp changed src/nodeitem.h changed src/nodeset.cpp changed src/nodeset.h changed src/output.cpp changed src/output.h changed src/parameter.cpp changed src/parameter.h changed src/pardialog.cpp changed src/pardialog.h changed src/parse.cpp changed src/parse.h changed src/perl/deployapp.pl changed src/perl/histogram.pl changed src/perl/make_parameter_source.pl changed src/perl/make_pardialog_source.pl changed src/perl/make_xmlwritecode.pl changed src/pi.h changed src/qcanvasarrow.h changed src/random.cpp changed src/random.h changed src/rseed.cpp changed src/rungekutta.cpp changed src/rungekutta.h changed src/simitembase.cpp changed src/simitembase.h changed src/simplugin.cpp changed src/simplugin.h changed src/sqr.h changed src/tiny.h changed src/transporterdialog.cpp changed src/transporterdialog.h changed src/vector.cpp changed src/vector.h changed src/vleafmodel.h changed src/wall.cpp changed src/wall.h changed src/wallbase.cpp changed src/wallbase.h changed src/wallitem.cpp changed src/wallitem.h changed src/warning.cpp changed src/warning.h changed src/xmlwrite.cpp changed src/xmlwrite.h default
Michael Guravage	137d9d3a313a	15 years ago	Removed most compilation warnings; see ChangeLogs for details. Removed most compilation warnings; see ChangeLogs for details. -- user: Michael Guravage <michael.guravage@cwi.nl> branch 'default' changed .hgignore changed src/ChangeLog changed src/VirtualLeaf.cpp changed src/apoplastitem.cpp changed src/build_models/ChangeLog changed src/build_models/auxingrowthplugin.cpp changed src/build_models/meinhardtplugin.cpp changed src/build_models/testplugin.cpp changed src/canvas.cpp changed src/cell.cpp changed src/cellbase.h changed src/forwardeuler.cpp changed src/mainbase.h changed src/mesh.cpp changed src/nodeitem.cpp changed src/output.cpp changed src/qcanvasarrow.h changed src/simitembase.cpp changed src/xmlwrite.cpp default
Michael Guravage	18e4f7f50259	15 years ago	Wrapped diagnostic messages in QDEBUG blocks. Information messages still go to stderr. Wrapped diagnostic messages in QDEBUG blocks. Information messages still go to stderr. -- user: Michael Guravage <michael.guravage@cwi.nl> branch 'default' changed src/ChangeLog changed src/VirtualLeaf.cpp changed src/build_models/Makefile changed src/canvas.cpp changed src/cell.cpp changed src/cellbase.h changed src/data_plot.cpp changed src/forwardeuler.cpp changed src/mesh.cpp changed src/mesh.h changed src/random.cpp changed src/wall.cpp changed src/wallbase.cpp changed src/wallitem.cpp default
Michael Guravage	03ad6bb2f072	15 years ago	Merged my code (8b6e1d8e0734 ) with Roeland's latest changes (f23676d337db ). default
Roeland Merks	aaba9e8828d6	15 years ago	Added to new menu options: edit->ResetChemicals and edit->ResetTransporters, which allows you to set only the chemicals or only the transporters to the initial values. I needed this for preparing a suitable initial condition for Tutorial 6 and thought it would be useful for the main distribution. Added to new menu options: edit->ResetChemicals and edit->ResetTransporters, which allows you to set only the chemicals or only the transporters to the initial values. I needed this for preparing a suitable initial condition for Tutorial 6 and thought it would be useful for the main distribution. -- user: Roeland Merks <roeland.merks@cwi.nl> branch 'default' changed src/build_models/Makefile changed src/canvas.cpp changed src/canvas.h changed src/mesh.cpp changed src/mesh.h default
Michael Guravage	311dea91a9b6	15 years ago	Merged Roeland's latest changes with my project file changes (16:3f0977faba37 ). Merged Roeland's latest changes with my project file changes (16:3f0977faba37). -- user: Michael Guravage <michael.guravage@cwi.nl> branch merge branch 'default' changed src/Makefile changed src/TutorialCode/Tutorial0/mymodel.cpp changed src/TutorialCode/Tutorial0/mymodel.h changed src/TutorialCode/Tutorial0/mymodel.pro changed src/TutorialCode/Tutorial1/mymodel.cpp changed src/TutorialCode/Tutorial1/mymodel.h changed src/TutorialCode/Tutorial1/mymodel.pro changed src/TutorialCode/Tutorial2/mymodel.cpp changed src/TutorialCode/Tutorial2/mymodel.h changed src/TutorialCode/Tutorial2/mymodel.pro changed src/TutorialCode/Tutorial3/mymodel.cpp changed src/TutorialCode/Tutorial3/mymodel.h changed src/TutorialCode/Tutorial3/mymodel.pro changed src/TutorialCode/Tutorial4/mymodel.cpp changed src/TutorialCode/Tutorial4/mymodel.h changed src/TutorialCode/Tutorial4/mymodel.pro changed src/TutorialCode/Tutorial5/mymodel.cpp changed src/TutorialCode/Tutorial5/mymodel.h changed src/TutorialCode/Tutorial5/mymodel.pro changed src/VirtualLeaf.pro changed src/VirtualLeafpar.tmpl changed src/build_models/Makefile changed src/build_models/auxingrowthplugin.cpp changed src/build_models/auxingrowthplugin.h changed src/build_models/leafplugin.cpp changed src/build_models/leafplugin.h changed src/build_models/meinhardtplugin.cpp changed src/build_models/meinhardtplugin.h changed src/build_models/plugin_auxingrowth.pro changed src/build_models/plugin_leaf.pro changed src/build_models/plugin_meinhardt.pro changed src/build_models/plugin_test.pro changed src/build_models/testplugin.cpp changed src/build_models/testplugin.h changed src/build_models/translate_plugin.pl changed src/cell.cpp changed src/cellbase.h changed src/libplugin.pro changed src/mesh.cpp changed src/mesh.h changed src/modelcatalogue.cpp changed src/simplugin.h removed src/build_models/simplugin.h default
Roeland Merks	2833fdcd343d	15 years ago	Merged with main branch, hoping I didn't mess this up. default
Roeland Merks	413a4067bfff	15 years ago	Changed interface for model plugins to make usage of pointers and references consistent. Changed interface for model plugins to make usage of pointers and references consistent. Added codes for tutorial belonging to VLeaf manuscript. Something changed in modelcatalogue. I'm not sure what... user: Roeland Merks <roeland.merks@cwi.nl> branch 'default' added src/TutorialCode/Tutorial0/mymodel.cpp added src/TutorialCode/Tutorial0/mymodel.h added src/TutorialCode/Tutorial0/mymodel.pro added src/TutorialCode/Tutorial1/mymodel.cpp added src/TutorialCode/Tutorial1/mymodel.h added src/TutorialCode/Tutorial1/mymodel.pro added src/TutorialCode/Tutorial2/mymodel.cpp added src/TutorialCode/Tutorial2/mymodel.h added src/TutorialCode/Tutorial2/mymodel.pro added src/TutorialCode/Tutorial3/mymodel.cpp added src/TutorialCode/Tutorial3/mymodel.h added src/TutorialCode/Tutorial3/mymodel.pro added src/TutorialCode/Tutorial4/mymodel.cpp added src/TutorialCode/Tutorial4/mymodel.h added src/TutorialCode/Tutorial4/mymodel.pro added src/TutorialCode/Tutorial5/mymodel.cpp added src/TutorialCode/Tutorial5/mymodel.h added src/TutorialCode/Tutorial5/mymodel.pro added src/build_models/translate_plugin.pl changed src/VirtualLeafpar.tmpl changed src/build_models/auxingrowthplugin.cpp changed src/build_models/auxingrowthplugin.h changed src/build_models/meinhardtplugin.cpp changed src/build_models/meinhardtplugin.h changed src/build_models/plugin_auxingrowth.pro changed src/build_models/plugin_leaf.pro changed src/build_models/plugin_meinhardt.pro changed src/build_models/plugin_test.pro changed src/cell.cpp changed src/cellbase.cpp changed src/cellbase.h changed src/libplugin.pro changed src/mesh.cpp changed src/mesh.h changed src/modelcatalogue.cpp changed src/simplugin.h default
Michael Guravage	c8fbdf1e4153	15 years ago	Roeland's recent improvements - especially a more robust Mesh::Derivatives(). Roeland's recent improvements - especially a more robust Mesh::Derivatives(). -- user: Michael Guravage <michael.guravage@cwi.nl> branch 'default' changed src/VirtualLeaf.pro changed src/build_models/plugin_test.pro changed src/cell.cpp changed src/cellbase.cpp changed src/cellbase.h changed src/mesh.cpp changed src/mesh.h default
Michael Guravage	79f94eaa3b9e	15 years ago	Initial Commit default