Export Cell Data at interval specified in the leafML file or explicitly via the file menu.
Added new parameters to VirtualLeafpar.tmpl
Added GPL boilerplate to make_{parameter,pardialog}_source.pl files.
Added new parameters to auxin_growth.xml. See respective ChangeLog files for details.

--
user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'
changed data/leaves/ChangeLog
changed data/leaves/auxin_growth.xml
changed src/ChangeLog
changed src/VirtualLeafpar.tmpl
changed src/canvas.cpp
changed src/canvas.h
changed src/parameter.cpp
changed src/parameter.h
changed src/pardialog.cpp
changed src/pardialog.h
changed src/perl/ChangeLog
changed src/perl/make_parameter_source.pl
changed src/perl/make_pardialog_source.pl

Made changes to conform to the version submitted with the Plant Physiology paper. See the individual ChangeLogs for details.

--
user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'
added lib/libiconv/bin/iconv.exe
added lib/libiconv/bin/libcharset-1.dll
added lib/libiconv/bin/libiconv-2.dll
added src/gpl3.txt
changed INSTALL
changed src/ChangeLog
changed src/TutorialCode/Tutorial0/ChangeLog
changed src/TutorialCode/Tutorial0/tutorial0.pro
changed src/TutorialCode/Tutorial1A/ChangeLog
changed src/TutorialCode/Tutorial1A/tutorial1A.pro
changed src/TutorialCode/Tutorial1B/ChangeLog
changed src/TutorialCode/Tutorial1B/tutorial1B.pro
changed src/TutorialCode/Tutorial1C/ChangeLog
changed src/TutorialCode/Tutorial1C/tutorial1C.pro
changed src/TutorialCode/Tutorial1D/ChangeLog
changed src/TutorialCode/Tutorial1D/tutorial1D.pro
changed src/TutorialCode/Tutorial2/ChangeLog
changed src/TutorialCode/Tutorial2/tutorial2.pro
changed src/TutorialCode/Tutorial3/ChangeLog
changed src/TutorialCode/Tutorial3/tutorial3.pro
changed src/TutorialCode/Tutorial4/ChangeLog
changed src/TutorialCode/Tutorial4/tutorial4.pro
changed src/TutorialCode/Tutorial5/ChangeLog
changed src/TutorialCode/Tutorial5/tutorial5.pro
changed src/VirtualLeaf-install.nsi
changed src/VirtualLeaf.pro
changed src/build_models/ChangeLog
changed src/build_models/plugin_auxingrowth.pro
changed src/build_models/plugin_meinhardt.pro
changed src/build_models/plugin_test.pro
changed src/canvas.cpp
changed src/libplugin.pro
changed src/output.cpp
changed src/output.h
changed src/parameter.cpp
changed src/parameter.h
changed src/perl/ChangeLog
changed src/perl/make_parameter_source.pl
removed doc/gpl3.txt

Renamed tutorial examples and added makefile, etc.

--
user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'
added doc/gpl3.txt
added doc/installation.pdf
added doc/installation.rst
added src/TutorialCode/Makefile
added src/TutorialCode/Tutorial0/Makefile
added src/TutorialCode/Tutorial0/tutorial0.cpp
added src/TutorialCode/Tutorial0/tutorial0.h
added src/TutorialCode/Tutorial0/tutorial0.pro
added src/TutorialCode/Tutorial1A/Makefile
added src/TutorialCode/Tutorial1A/tutorial1A.cpp
added src/TutorialCode/Tutorial1A/tutorial1A.h
added src/TutorialCode/Tutorial1A/tutorial1A.pro
added src/TutorialCode/Tutorial1B/Makefile
added src/TutorialCode/Tutorial1B/tutorial1B.cpp
added src/TutorialCode/Tutorial1B/tutorial1B.h
added src/TutorialCode/Tutorial1B/tutorial1B.pro
added src/TutorialCode/Tutorial1C/Makefile
added src/TutorialCode/Tutorial1C/tutorial1C.cpp
added src/TutorialCode/Tutorial1C/tutorial1C.h
added src/TutorialCode/Tutorial1C/tutorial1C.pro
added src/TutorialCode/Tutorial1D/Makefile
added src/TutorialCode/Tutorial1D/tutorial1D.cpp
added src/TutorialCode/Tutorial1D/tutorial1D.h
added src/TutorialCode/Tutorial1D/tutorial1D.pro
added src/TutorialCode/Tutorial2/Makefile
added src/TutorialCode/Tutorial2/tutorial2.cpp
added src/TutorialCode/Tutorial2/tutorial2.h
added src/TutorialCode/Tutorial2/tutorial2.pro
added src/TutorialCode/Tutorial3/Makefile
added src/TutorialCode/Tutorial3/tutorial3.cpp
added src/TutorialCode/Tutorial3/tutorial3.h
added src/TutorialCode/Tutorial3/tutorial3.pro
added src/TutorialCode/Tutorial4/Makefile
added src/TutorialCode/Tutorial4/tutorial4.cpp
added src/TutorialCode/Tutorial4/tutorial4.h
added src/TutorialCode/Tutorial4/tutorial4.pro
added src/TutorialCode/Tutorial5/Makefile
added src/TutorialCode/Tutorial5/tutorial5.cpp
added src/TutorialCode/Tutorial5/tutorial5.h
added src/TutorialCode/Tutorial5/tutorial5.pro
added src/perl/ChangeLog
changed src/ChangeLog
changed src/Makefile
changed src/build_models/ChangeLog
changed src/build_models/Makefile
changed src/canvas.cpp
changed src/parameter.cpp
changed src/parameter.h
changed src/pardialog.cpp
changed src/pardialog.h
changed src/perl/make_parameter_source.pl
changed src/perl/make_pardialog_source.pl
changed src/perl/make_xmlwritecode.pl
changed src/vleafmodel.h
removed doc/GPL
removed src/TutorialCode/Tutorial0/mymodel.cpp
removed src/TutorialCode/Tutorial0/mymodel.h
removed src/TutorialCode/Tutorial0/mymodel.pro
removed src/TutorialCode/Tutorial1/mymodel.cpp
removed src/TutorialCode/Tutorial1/mymodel.h
removed src/TutorialCode/Tutorial1/mymodel.pro
removed src/TutorialCode/Tutorial1A/mymodel.cpp
removed src/TutorialCode/Tutorial1A/mymodel.h
removed src/TutorialCode/Tutorial1A/mymodel.pro
removed src/TutorialCode/Tutorial1B/mymodel.cpp
removed src/TutorialCode/Tutorial1B/mymodel.h
removed src/TutorialCode/Tutorial1B/mymodel.pro
removed src/TutorialCode/Tutorial1C/mymodel.cpp
removed src/TutorialCode/Tutorial1C/mymodel.h
removed src/TutorialCode/Tutorial1C/mymodel.pro
removed src/TutorialCode/Tutorial1D/mymodel.cpp
removed src/TutorialCode/Tutorial1D/mymodel.h
removed src/TutorialCode/Tutorial1D/mymodel.pro
removed src/TutorialCode/Tutorial2/mymodel.cpp
removed src/TutorialCode/Tutorial2/mymodel.h
removed src/TutorialCode/Tutorial2/mymodel.pro
removed src/TutorialCode/Tutorial3/mymodel.cpp
removed src/TutorialCode/Tutorial3/mymodel.h
removed src/TutorialCode/Tutorial3/mymodel.pro
removed src/TutorialCode/Tutorial4/mymodel
removed src/TutorialCode/Tutorial4/mymodel.cpp
removed src/TutorialCode/Tutorial4/mymodel.h
removed src/TutorialCode/Tutorial4/mymodel.pro
removed src/TutorialCode/Tutorial5/mymodel
removed src/TutorialCode/Tutorial5/mymodel.cpp
removed src/TutorialCode/Tutorial5/mymodel.h
removed src/TutorialCode/Tutorial5/mymodel.pro

Reformatted the source files and generally straighten up the code.

--
user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'

changed src/Neighbor.cpp
changed src/Neighbor.h
changed src/OptionFileDialog.cpp
changed src/OptionFileDialog.h
changed src/UniqueMessage.cpp
changed src/UniqueMessage.h
changed src/VirtualLeaf.cpp
changed src/apoplastitem.cpp
changed src/apoplastitem.h
changed src/build_models/auxingrowthplugin.cpp
changed src/build_models/auxingrowthplugin.h
changed src/build_models/meinhardtplugin.cpp
changed src/build_models/meinhardtplugin.h
changed src/build_models/testplugin.cpp
changed src/build_models/testplugin.h
changed src/build_models/translate_plugin.pl
changed src/canvas.cpp
changed src/canvas.h
changed src/cell.cpp
changed src/cell.h
changed src/cellbase.cpp
changed src/cellbase.h
changed src/cellitem.cpp
changed src/cellitem.h
changed src/curvecolors.h
changed src/data_plot.cpp
changed src/data_plot.h
changed src/far_mem_5.h
changed src/flux_function.h
changed src/forwardeuler.cpp
changed src/forwardeuler.h
changed src/infobar.h
changed src/mainbase.cpp
changed src/mainbase.h
changed src/matrix.cpp
changed src/matrix.h
changed src/maxmin.h
changed src/mesh.cpp
changed src/mesh.h
changed src/miscq.cpp
changed src/miscq.h
changed src/modelcatalogue.cpp
changed src/modelcatalogue.h
changed src/modelelement.h
changed src/node.cpp
changed src/node.h
changed src/nodeitem.cpp
changed src/nodeitem.h
changed src/nodeset.cpp
changed src/nodeset.h
changed src/output.cpp
changed src/output.h
changed src/parameter.cpp
changed src/parameter.h
changed src/pardialog.cpp
changed src/pardialog.h
changed src/parse.cpp
changed src/parse.h
changed src/perl/deployapp.pl
changed src/perl/histogram.pl
changed src/perl/make_parameter_source.pl
changed src/perl/make_pardialog_source.pl
changed src/perl/make_xmlwritecode.pl
changed src/pi.h
changed src/qcanvasarrow.h
changed src/random.cpp
changed src/random.h
changed src/rseed.cpp
changed src/rungekutta.cpp
changed src/rungekutta.h
changed src/simitembase.cpp
changed src/simitembase.h
changed src/simplugin.cpp
changed src/simplugin.h
changed src/sqr.h
changed src/tiny.h
changed src/transporterdialog.cpp
changed src/transporterdialog.h
changed src/vector.cpp
changed src/vector.h
changed src/vleafmodel.h
changed src/wall.cpp
changed src/wall.h
changed src/wallbase.cpp
changed src/wallbase.h
changed src/wallitem.cpp
changed src/wallitem.h
changed src/warning.cpp
changed src/warning.h
changed src/xmlwrite.cpp
changed src/xmlwrite.h

I have replaced the instances of strtod for the Qt conversion functions via QLocale. Possibly there is some remaining usage of atof and atoi.

user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
changed src/perl/make_parameter_source.pl
changed src/xmlwrite.cpp