EI/VirtualLeaf Changeset - 4d22d3755063 · Centrum Wiskunde & Informatica (CWI)

Changeset - 4d22d3755063

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Roeland Merks - 15 years ago 2010-10-14 11:53:43
roeland.merks@cwi.nl

Merged ChangeLog

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user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
changed data/leaves/ChangeLog
changed data/leaves/auxin_growth.xml
changed doc/v1.html
changed doc/v1.pdf
changed doc/v1.rst
changed src/ChangeLog

6 files changed with 269 insertions and 235 deletions:

data/leaves/ChangeLog

data/leaves/auxin_growth.xml

doc/v1.html

doc/v1.pdf

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doc/v1.rst

src/ChangeLog

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data/leaves/ChangeLog

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 -10-14    <guravage@caterpie.sen.cwi.nl>
 	* auxin_growth.xml: Changed export_fn_prefix to 'cell.'
 -10-08    <guravage@caterpie.sen.cwi.nl>
 	* auxin_growth.xml: Added export_interval and export_fn_prefix parameters.

data/leaves/auxin_growth.xml

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@@ @@ -27,7 +27,7 @@ @@
 <leaf name="/Users/roel/VLeafClean_plugin/Snapshot/VLeafMacOSX/auxin_growth.xml" date="Sat Aug 29 18:28:19 2009" simtime="11660">
   <parameter>
     <par name="export_interval" val="1000"/>
-    <par name="export_fn_prefix" val="CELLDATA_"/>
+    <par name="export_fn_prefix" val="cell."/>
     <par name="arrowcolor" val="white"/>
     <par name="arrowsize" val="10"/>
     <par name="textcolor" val="red"/>

doc/v1.html

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@@ @@ -544,7 +544,6 @@ LanguageError: IOError: [Errno 2] No tra @@
 </div>
 <div class="section" id="re-install">
 <h2>RE-INSTALL</h2>
 <blockquote>
 <ol class="arabic simple">
 <li>easy_install mercurial</li>
 <li>mkdir src</li>
@@ @@ -555,14 +554,8 @@ LanguageError: IOError: [Errno 2] No tra @@
 <li>python configure.py</li>
 <li>make</li>
 <li>make install</li>
 </ol>
 </blockquote>
 <div class="system-message">
 <p class="system-message-title">System Message: WARNING/2 (<tt class="docutils">v1.rst</tt>, line 295)</p>
 Block quote ends without a blank line; unexpected unindent.</div>
 <ol class="arabic simple" start="10">
 <li>cd ..</li>
-<li>curl <a class="reference external" href="http://www.riverbankcomputing.com/static/Downloads/PyQt4/PyQt-x11-gpl-4.7.7.tar.gz">http://www.riverbankcomputing.com/static/Downloads/PyQt4/PyQt-x11-gpl-4.7.7.tar.gz</a></li>
+<li>wget <a class="reference external" href="http://www.riverbankcomputing.com/static/Downloads/PyQt4/PyQt-x11-gpl-4.7.7.tar.gz">http://www.riverbankcomputing.com/static/Downloads/PyQt4/PyQt-x11-gpl-4.7.7.tar.gz</a></li>
 <li>tar xzf PyQt-x11-gpl-4.7.7</li>
 <li>cd PyQt-x11-gpl-4.7.7</li>
 <li>python configure.py</li>
@@ @@ -573,12 +566,9 @@ Block quote ends without a blank line; u @@
 <li>cd cutehg</li>
 <li>python setup.py build</li>
 <li>python setup.py install</li>
 <li>cd ..</li>
 <li>easy_install rhodecode, <a class="reference external" href="http://pypi.python.org/pypi/RhodeCode/1.0.0rc2">http://pypi.python.org/pypi/RhodeCode/1.0.0rc2</a></li>
 </ol>
 <div class="system-message">
 <p class="system-message-title">System Message: WARNING/2 (<tt class="docutils">v1.rst</tt>, line 307)</p>
 Enumerated list ends without a blank line; unexpected unindent.</div>
 <p>22. cd ..
 . easy_install rhodecode, <a class="reference external" href="http://pypi.python.org/pypi/RhodeCode/1.0.0rc2">http://pypi.python.org/pypi/RhodeCode/1.0.0rc2</a></p>
 <p>This procedure fails as before.</p>
 <p>However, upon inspection I saw that the i18n directory was missing
 from my build but present in the rhodecode clone from bitbucket. While

doc/v1.pdf

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  /Size 67 >>
 startxref
 %%EOF

doc/v1.rst

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@@ @@ -283,17 +283,17 @@ All goes tolerably until you tick in the @@
 RE-INSTALL
 ++++++++++
 . easy_install mercurial
 . mkdir src
 . cd src
 . hg clone http://www.riverbankcomputing.com/hg/sip
 . cd sip
 . python build.py prepare
 . python configure.py
 . make
 . make install
 . easy_install mercurial
 . mkdir src
 . cd src
 . hg clone http://www.riverbankcomputing.com/hg/sip
 . cd sip
 . python build.py prepare
 . python configure.py
 . make
 . make install
 . cd ..
-. curl http://www.riverbankcomputing.com/static/Downloads/PyQt4/PyQt-x11-gpl-4.7.7.tar.gz
+. wget http://www.riverbankcomputing.com/static/Downloads/PyQt4/PyQt-x11-gpl-4.7.7.tar.gz
 . tar xzf PyQt-x11-gpl-4.7.7
 . cd PyQt-x11-gpl-4.7.7
 . python configure.py
@@ @@ -305,7 +305,7 @@ 19. cd cutehg @@
 . python setup.py build
 . python setup.py install
 . cd ..
-. easy_install rhodecode, http://pypi.python.org/pypi/RhodeCode/1.0.0rc2
+. easy_install rhodecode, http://pypi.python.org/pypi/RhodeCode/1.0.0rc2
 This procedure fails as before.
@@ @@ -339,9 +339,14 @@ still be justified - though they become @@
 introduce the new schema changes.
 Wednesday 13 October 2010
 -------------------------
 Tweaked ``.bashrc`` and ``virtualenvwrapper.sh`` to facilitate
 virtualenv and virtualenvwrapper - many unbound variables!
 Pushed recent changes to repository from where Roeland can retrieve
 and test them.
 OK. RhodeCode RC4 works out of the box, excepting cutehg and PyQt4.

src/ChangeLog

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@@ @@ -11,7 +11,15 @@ 2010-10-14 <merks@cwi.nl> @@
 	* VirtualLeaf.cpp: adjust info_string to accomodate for new name of function CellBase::Circumference -> CellBase::WallCircumference
 	* mesh.cpp: corrected Mesh::Compactness, the boundary coordinates need to be sorted in x,y order for the convex hull algorithm (thanks Margriet!). I updated CSVExportCellData so it exports the circumferences of hull and boundary_polygon.
 -10-14    <guravage@caterpie.sen.cwi.nl>
 	* VirtualLeafpar.tmpl (export_fn_prefix): changed to 'cell.'
 	* canvas.cpp (TimeStepWrap): Removed TimeStamp(). Cell data
 	filename now incorporates iteration number.
 	* canvas.h (MainBase): Removed TimeStamp().
 -10-08    <guravage@caterpie.sen.cwi.nl>

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