2011-01-12    <guravage@petitdru.sen.cwi.nl>

	* transporterdialog.cpp (TransporterDialog): Add a proper title to

	the dialog, and place the cell and wall pairs in a seperate labe.

2011-01-10    <guravage@petitdru.sen.cwi.nl>

	* transporterdialog.cpp (TransporterDialog): Start numbering Transporter fields at zero.

	Resolves issue #1: http://code.google.com/p/virtualleaf/issues/detail?id=1.

	* wallitem.cpp (OnClick): Change dialog modality to Qt::WindowModal.

	Resolves issue #2: http://code.google.com/p/virtualleaf/issues/detail?id=2.

	* canvas.cpp (about): Add link to Plant Physiology paper.

	Resolves issue #3: http://code.google.com/p/virtualleaf/issues/detail?id=3.

2010-11-30    <guravage@petitdru.sen.cwi.nl>

	* canvas.cpp (snapshot): Preface each image format extension with

	an asterisk so files with those extensions to appear in the file

	dialogue.

	(snapshot): Forgot to add asterisk before our own pdf format.

	* VirtualLeaf-install-windows.nsi: Include imageformats folder

	alongside executable.

	* canvas.cpp (snapshot): PNG is the default image format.

2010-11-29    <guravage@petitdru.sen.cwi.nl>

	* canvas.cpp (snapshot): Query and display supported snapshot file

	formats.

	* VirtualLeaf-install-windows.nsi: To facilitate debugging I added

	the debug versions of all the windows DLLs.

2010-10-19    <guravage@caterpie.sen.cwi.nl>

	* mainbase.cpp (Save): Use format specified in function prototype.

	* VirtualLeaf.cpp (Plot): Render PNG instead of JPEG. Write image

	and XML files dependent only on getTime().

2010-10-18    <guravage@caterpie.sen.cwi.nl>

	* mainbase.cpp (Save): QDir::toNativeSeparators(fname). Invoke

	save with format argument set to zero to force QImage to guess the

	format by looking at fileName's suffix.

# Language files

!insertmacro MUI_LANGUAGE "English"

# MUI end ------

# set the name of the installer

outfile "VirtualLeaf-install.exe"

Name "${PRODUCT_NAME} ${PRODUCT_VERSION}"

ShowInstDetails show

ShowUnInstDetails show

# define the directory to install to

installDir C:\VirtualLeaf

# Request application privileges

RequestExecutionLevel user

section "Virtual Leaf executable"

  #sectionIn RO

  # define the output path for the Virtual Leaf executable

  setOutPath $INSTDIR\bin

  writeUninstaller $INSTDIR\uninstaller.exe

  file ..\bin\VirtualLeaf.exe

  # Required DLLs

  setOutPath $INSTDIR\bin

  file ..\lib\libiconv\bin\libiconv-2.dll

  file ..\lib\libxml2\lib\libxml2.dll

  file ..\lib\libz\bin\zlib1.dll

  # Is the pegging of these DLLs to a specific QT version a problem?

  file C:\Qt\2010.02.1\mingw\bin\mingwm10.dll

  file C:\Qt\2010.02.1\mingw\bin\libgcc_s_dw2-1.dll

  file C:\Qt\2010.02.1\qt\bin\Qt3Support4.dll

  file C:\Qt\2010.02.1\qt\bin\QtCore4.dll

  file C:\Qt\2010.02.1\qt\bin\QtGui4.dll

  file C:\Qt\2010.02.1\qt\bin\QtNetwork4.dll

  file C:\Qt\2010.02.1\qt\bin\QtSql4.dll

  file C:\Qt\2010.02.1\qt\bin\QtXml4.dll

  # Prepend the Virtual Leaf bin directory to the installers PATH

  ${EnvVarUpdate} $0 "PATH" "P" "HKCU" "$INSTDIR\bin"  

  # create a shortcut named "VirtualLeaf" in the start menu programs directory

  # point the new shortcut at the program VirtualLeaf

  createShortCut "$SMPROGRAMS\VirtualLeaf.lnk" "$INSTDIR\bin\VirtualLeaf.exe"

sectionEnd

section "Image Formats"

  # define the output path for the Qt Image Formats

  setOutPath $INSTDIR\bin\imageformats

  file C:\Qt\2010.02.1\qt\plugins\imageformats\qgif4.dll

  file C:\Qt\2010.02.1\qt\plugins\imageformats\qico4.dll

  file C:\Qt\2010.02.1\qt\plugins\imageformats\qjpeg4.dll

  file C:\Qt\2010.02.1\qt\plugins\imageformats\qmng4.dll

  file C:\Qt\2010.02.1\qt\plugins\imageformats\qsvg4.dll

  file C:\Qt\2010.02.1\qt\plugins\imageformats\qtiff4.dll

sectionEnd

section "Virtual Leaf plugins"

  # define the output path for the Virtual Leaf models

  setOutPath $INSTDIR\bin\models

  file ..\bin\models\*

sectionEnd

section "Virtual Leaf data"

  # define the output path for the Virtual Leaf models

  setOutPath $INSTDIR\data\leaves

  file ..\data\leaves\*

sectionEnd

section "Virtual Leaf docs"

  # define the output path for the Virtual Leaf documentation

  setOutPath $INSTDIR\doc

  file ..\doc\*

sectionEnd

# create a section to define what the uninstaller does.

# the section will always be named "Uninstall"

section "Uninstall"

  # Always delete uninstaller first

  delete $INSTDIR\uninstaller.exe

  # Now delete installed file

  !insertmacro RemoveFilesAndSubDirs "$INSTDIR"

  # Delete shortcut from start menu

  delete "$SMPROGRAMS\VirtualLeaf.lnk"

  # Last but not least - delete the path  

  ${un.EnvVarUpdate} $0 "PATH" "R" "HKCU" "$INSTDIR\bin"

sectionEnd

    fileName = fd->selectedFile();

    if (working_dir) {

      delete working_dir;

    }

    working_dir = fd->dir();

    if (readStateXML((const char *)fileName,fd->readGeometryP(), fd->readParametersP()) )

      return readStateXML(); // user can try again

  }

}

void Main::clear()

{

  editor->clear();

}

void Main::about()

{

  static QMessageBox* about = new QMessageBox

    ( "VirtualLeaf V1.0",

      "<h3>VirtualLeaf V1.0</h3>\

       <p>\

         An Open Source framework for cell-based modeling of plant\

         tissue growth and development.\

       </p>\

       <p>(c) 2005-2008, Roeland Merks <i>et al.</i>\

         <a href=\"http://www.psb.vib-ugent.be\">VIB Department Plant Systems Biology</a>,\

         Ghent, Belgium.\

       </p>\

       <p>(c) 2008-2010,\

         <a href=\"http://www.cwi.nl/~merks\">Roeland Merks <i>et al.</i></a>\

         <a href=\"http://www.cwi.nl\">Centrum Wiskunde & Informatica (CWI)</a> and\

         <a href=\"http://www.ncsb.nl\"> Netherlands Consortium for Systems Biology (NCSB)</a>,\

         Amsterdam, the Netherlands.\

       </p>\

       <p>\

         VirtualLeaf is free software: you can redistribute it and/or\

         modify it under the terms of the GNU General Public License as\

         published by the Free Software Foundation, either version 3 of the\

         License, or (at your option) any later version.\

       </p>\

       <p>\

         If you use this code for your projects, please cite our paper in\

         <a href=\"http://www.plantphysiol.org\">Plant Physiology</a>, &lsquo;\

         Roeland M. H. Merks, Michael Guravage, Dirk Inze, and Gerrit T.S. Beemster,\

         <a href=\"http://www.plantphysiol.org/cgi/content/short/pp.110.167619?keytype=ref&ijkey=YTmfxrHG5QCsa8k\">\

         VirtualLeaf: an Open Source framework for cell-based modeling of plant tissue growth and development</a>,<br>\

       </p>\

       <p>\

         Please share your model plugins and extensions at\

         <a href=\"http://virtualleaf.googlecode.com\">http://virtualleaf.googlecode.com</a>.\

       </p>",

      QMessageBox::Information, 1, 0, 0, this, 0, FALSE );

  about->setButtonText( 1, "Dismiss" );

  about->show();

}

void Main::gpl()

{

  static QMessageBox* gpl = new QMessageBox ( "GPL License", "", 

      QMessageBox::Information, 1, 0, 0, this, 0, FALSE );

  QDir docDir(QApplication::applicationDirPath());

  docDir.cd("../doc"); // Where Linux expects gpl3.txt

  QString path = docDir.filePath("gpl3.txt");

  if (!docDir.exists("gpl3.txt")){

    docDir = QApplication::applicationDirPath();

    docDir.cd("doc"); // Where Windows expects gpl3.txt

    path = docDir.filePath("gpl3.txt");

  }

  // At this point path points either to the linux variant, which

  // exists, or the windows variant, which may exist. Testing the

  // ifstream object will determine whether we've found gpl3.txt.

  std::ifstream file(path.toStdString().c_str());

  std::string str;

  if (file) {

    file.seekg(0, std::ios::end);   

    str.reserve(file.tellg());

    file.seekg(0, std::ios::beg);

    str.assign((std::istreambuf_iterator<char>(file)),

	       std::istreambuf_iterator<char>());

    gpl->setDetailedText(QString(str.c_str()));

  }

  gpl->setText(QString( "<h3>GNU GENERAL PUBLIC LICENSE</h3>"

			"<p>Version 3, 29 June 2007</p>"

			"<p>Copyright &copy; 2007 Free Software Foundation, Inc. "

			"&lt;<a href=\"http://fsf.org/\">http://fsf.org/</a>&gt;</p><p>"

			"Everyone is permitted to copy and distribute verbatim copies "

			"of this license document, but changing it is not allowed.</p>"

			"<h2>GNU GENERAL PUBLIC LICENSE</h2>"));

  gpl->setButtonText( 1, "Dismiss" );

  gpl->show();

}