2010-10-19    <guravage@caterpie.sen.cwi.nl>

	* mainbase.cpp (Save): Use format specified in function prototype.

	* VirtualLeaf.cpp (Plot): Render PNG instead of JPEG. Write image

	and XML files dependent only on getTime().

2010-10-18    <guravage@caterpie.sen.cwi.nl>

	* mainbase.cpp (Save): QDir::toNativeSeparators(fname). Invoke

	save with format argument set to zero to force QImage to guess the

	format by looking at fileName's suffix.

	* VirtualLeaf-install.nsi: Put uninstaller in top directory.

	* modelcatalogue.cpp (InstallModel): For all OS-es. Move from "bin" directory to root application folder.

	* VirtualLeaf.pro: MAXOSX, look for gpl3.txt in the ../doc directory.

	* Makefile (Makefile.libplugin): Removed -makefile qmake option.

	* VirtualLeaf.cpp (TIMESTEP): Removed getIterations().

	* mesh.h (Mesh): Removed {increment,get}Iterations().

	* canvas.cpp (TimeStepWrap): Replaced getIterations() with getTime().

2010-10-15    <guravage@caterpie.sen.cwi.nl>

	* mesh.h (Mesh): Added iterations. incrementIterations() and

	getIterations().

	* VirtualLeaf.cpp (Plot): Replaced local frame counter with

	mesh.incrementIterations().

	* canvas.cpp (TimeStepWrap): Replaced local counter with

	mesh.incrementIterations().

2010-10-14    <guravage@caterpie.sen.cwi.nl>

	* VirtualLeaf.pro: Turned debug off to make all profiles must be

	consistant.

	* VirtualLeaf-install.nsi: Tweaked paths to coincide with UNIX

	distribution, i.e. VirtualLeaf.exe, its libraries, models, and the

	uninstaller all go in the bin directory. And leaves directory

	placed under data directory.

# Directory page

!insertmacro MUI_PAGE_DIRECTORY

# Instfiles page

!insertmacro MUI_PAGE_INSTFILES

# Finish page

!insertmacro MUI_PAGE_FINISH

# Uninstaller pages

!insertmacro MUI_UNPAGE_CONFIRM

!insertmacro MUI_UNPAGE_INSTFILES

!insertmacro MUI_UNPAGE_FINISH

# Language files

!insertmacro MUI_LANGUAGE "English"

# MUI end ------

# set the name of the installer

outfile "VirtualLeaf-install.exe"

Name "${PRODUCT_NAME} ${PRODUCT_VERSION}"

ShowInstDetails show

ShowUnInstDetails show

# define the directory to install to

installDir C:\VirtualLeaf

# Request application privileges

RequestExecutionLevel user

section "Virtual Leaf executable"

  #sectionIn RO

  # define the output path for the Virtual Leaf executable

  setOutPath $INSTDIR\bin

  writeUninstaller $INSTDIR\uninstaller.exe

  file ..\bin\VirtualLeaf.exe

  # Required DLLs

  setOutPath $INSTDIR\bin

  file ..\lib\libiconv\bin\libiconv-2.dll

  file ..\lib\libxml2\lib\libxml2.dll

  file ..\lib\libz\bin\zlib1.dll

  # Is the pegging of these DLLs to a specific QT version a problem?

  file C:\Qt\2010.02.1\mingw\bin\mingwm10.dll

  file C:\Qt\2010.02.1\mingw\bin\libgcc_s_dw2-1.dll

  file C:\Qt\2010.02.1\qt\bin\Qt3Support4.dll

  file C:\Qt\2010.02.1\qt\bin\QtCore4.dll

  file C:\Qt\2010.02.1\qt\bin\QtGui4.dll

  file C:\Qt\2010.02.1\qt\bin\QtNetwork4.dll

  file C:\Qt\2010.02.1\qt\bin\QtSql4.dll

  file C:\Qt\2010.02.1\qt\bin\QtXml4.dll

  # Prepend the Virtual Leaf bin directory to the installers PATH

  ${EnvVarUpdate} $0 "PATH" "P" "HKCU" "$INSTDIR\bin"  

  # create a shortcut named "VirtualLeaf" in the start menu programs directory

  # point the new shortcut at the program VirtualLeaf

  createShortCut "$SMPROGRAMS\VirtualLeaf.lnk" "$INSTDIR\bin\VirtualLeaf.exe"

sectionEnd

section "Virtual Leaf plugins"

  # define the output path for the Virtual Leaf models

  setOutPath $INSTDIR\bin\models

  file ..\bin\models\*

sectionEnd

section "Virtual Leaf data"

  # define the output path for the Virtual Leaf models

  setOutPath $INSTDIR\data\leaves

  file ..\data\leaves\*

sectionEnd

section "Virtual Leaf docs"

  # define the output path for the Virtual Leaf documentation

  setOutPath $INSTDIR\doc

  file ..\doc\*

sectionEnd

# create a section to define what the uninstaller does.

# the section will always be named "Uninstall"

section "Uninstall"

  # Always delete uninstaller first

  delete $INSTDIR\uninstaller.exe

  # Now delete installed file

  !insertmacro RemoveFilesAndSubDirs "$INSTDIR"

  # Delete shortcut from start menu

  delete "$SMPROGRAMS\VirtualLeaf.lnk"

  # Last but not least - delete the path  

  ${un.EnvVarUpdate} $0 "PATH" "R" "HKCU" "$INSTDIR\bin"

sectionEnd

# finis

 *

 *  This file is part of the Virtual Leaf.

 *

 *  VirtualLeaf is free software: you can redistribute it and/or modify

 *  it under the terms of the GNU General Public License as published by

 *  the Free Software Foundation, either version 3 of the License, or

 *  (at your option) any later version.

 *

 *  VirtualLeaf is distributed in the hope that it will be useful,

 *  but WITHOUT ANY WARRANTY; without even the implied warranty of

 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

 *  GNU General Public License for more details.

 *

 *  You should have received a copy of the GNU General Public License

 *  along with the Virtual Leaf.  If not, see <http://www.gnu.org/licenses/>.

 *

 *  Copyright 2010 Roeland Merks.

 *

 */

#include <time.h>

#include <string>

#include <fstream>

#include <streambuf>

#include <QGraphicsScene>

#include <QGraphicsView>

#include <qdatetime.h>

#include <q3mainwindow.h>

#include <qstatusbar.h>

#include <qmessagebox.h>

#include <qmenubar.h>

#include <qapplication.h>

#include <qpainter.h>

#include <qprinter.h>

#include <qlabel.h>

#include <qimage.h>

#include <q3progressdialog.h>

#include <qtimer.h>

#include <qslider.h>

#include <qpixmap.h>

#include <qfile.h>

#include <qdir.h>

#include <q3filedialog.h>

#include <QGraphicsItem>

#include <QList>

#include <QDir>

#include <QFileInfo>

#include <QDebug>

#include <set>

//Added by qt3to4:

#include <Q3ValueList>

#include <Q3PopupMenu>

#include <QMouseEvent>

#include <typeinfo>

#include <cstring>

#include <q3process.h>

#include <qlayout.h>

#include <qspinbox.h>

#include <fstream>

#include <sstream>

#include "pardialog.h"

#include "parameter.h"

#include "canvas.h"

#include "node.h"

#include "nodeset.h"

#include "nodeitem.h"

#include "cellitem.h"

#include "wallitem.h"

#include "mesh.h"

#include "xmlwrite.h"

#include "OptionFileDialog.h"

#include <cstdlib>

#include <cstdio>

#include "modelcatalogue.h"

#include <algorithm>

// Include VIB and PSB logos

#include "psb.xpm"

#include "cwi.xpm"

static const std::string _module_id("$Id$");

using namespace std;

// We use a global variable to save memory - all the brushes and pens in

// the mesh are shared.

#define FNAMESIZE 100

#define QUOTE_ME(s) QUOTE_ME_2NDLEV(s)

#define QUOTE_ME_2NDLEV(s) #s

static QColor dark_red("darkRed");

  stopSimulation();

  Q3FileDialog *fd = new Q3FileDialog( this, "file dialog", TRUE );

  fd->setMode( Q3FileDialog::AnyFile );

  fd->setFilter( "LeafML files (*.xml)");

  fd->setDir(par.datadir);

  QString fileName;

  if ( fd->exec() == QDialog::Accepted ) {

    fileName = fd->selectedFile();

    // extract extension from filename

    QFileInfo fi(fileName);

    QString extension = fi.suffix();

    if (extension.isEmpty()) {

      extension = "xml";

      fileName += ".";

      fileName += extension;

    }

    if ( QFile::exists( fileName ) &&

	 QMessageBox::question(

			       this,

			       tr("Overwrite File? -- Leaf Growth"),

			       tr("A file called %1 already exists."

				  " Do you want to overwrite it?")

			       .arg( fileName ),

			       tr("&Yes"), tr("&No"),

			       QString::null, 1, 1 ) ) {

      return saveStateXML();

    } else {

      mesh.XMLSave((const char *)fileName, XMLSettingsTree());

      QString status_message;

      status_message = QString("Wrote LeafML to %1").arg(fileName);

      cerr << status_message.toStdString() << endl;

      statusBar()->showMessage(status_message);

    }

  }

}

void Main::snapshot()

{

  stopSimulation();

  Q3FileDialog *fd = new Q3FileDialog( this, "Save snapshot", TRUE );

  fd->setDir(par.datadir);

  fd->setMode( Q3FileDialog::AnyFile );

  QString fileName;

  if ( fd->exec() == QDialog::Accepted ) {

    fileName = fd->selectedFile();

    // extract extension from filename

    QFileInfo fi(fileName);

    QString extension = fi.suffix();

    if (extension.isEmpty()) {

      fileName += ".";

      fileName += extension;

    }

    if ( QFile::exists( fileName ) &&

	 QMessageBox::question(

			       this,

			       tr("Overwrite file? -- Cell data export"),

			       tr("A file called %1 already exists."

				  " Do you want to overwrite it?").arg( fileName ),

			       QMessageBox::Yes, QMessageBox::No 

			       ) == QMessageBox::No

	 ) {

      return snapshot();

    } else {

      // Save bitmaps at 1024x768

      QString status_message;

      if (Save((const char *)fileName, extension, 1024, 768)==0) {

	status_message = QString("Wrote snapshot to %1").arg(fileName);

      } else {

	status_message = QString("Error writing snapshot to %1").arg(fileName);

      }

      cerr << status_message.toStdString() << endl;

      statusBar()->showMessage(status_message);

    }

  }

}

void Main::readPrevStateXML()

{

  // if we have already read a file, read the next file

  if (!currentFile.isEmpty() && working_dir) {

    QString next_file;

    QStringList xml_files = working_dir->entryList("*.xml");

    QString currentFile_nopath = currentFile.section( '/', -1 );

    QString currentFile_path = currentFile.section( '/', 0, -2 );

    QList<QString>::iterator f = xml_files.find( currentFile_nopath );