title = Parameter values for The Virtual Leaf / title label = Visualization / label arrowcolor = white / string arrowsize = 100 / double textcolor = red / string cellnumsize = 1 / int nodenumsize = 1 / int node_mag = 1.0 / double outlinewidth = 1.0 / double cell_outline_color = forestgreen / string resize_stride = 0 / int label = / label label = Cell mechanics / label T = 1.0 / double lambda_length = 100. / double yielding_threshold = 4. / double lambda_celllength = 0. / double target_length = 60. / double cell_expansion_rate = 1. / double cell_div_expansion_rate = 0. / double auxin_dependent_growth = true / bool ode_accuracy = 1e-4 / double mc_stepsize = 0.4 / double mc_cell_stepsize = 0.2 / double energy_threshold = 1000. / double bend_lambda = 0. / double alignment_lambda = 0. / double rel_cell_div_threshold = 2. / double rel_perimeter_stiffness = 2 / double collapse_node_threshold = 0.05 / double morphogen_div_threshold = 0.2 / double morphogen_expansion_threshold = 0.01 / double copy_wall = true / bool label = / label label = Auxin transport and PIN1 dynamics / label source = 0. / double D = 0., 0.0, 0.0, 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0. / doublelist initval = 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0. / doublelist k1 = 1. / double k2 = 0.3 / double r = 1. / double kr = 1. / double #k3 = 1 / double #k4 = 0.3 / double km = 1. / double Pi_tot = 1. / double transport = 0.036 / double ka = 1 / double # d = 1e-06 / double # e = 0.01 / double # f = 10 / double pin_prod = 0.001 / double pin_prod_in_epidermis = 0.1 / double pin_breakdown = 0.001 / double pin_breakdown_internal = 0.001 / double aux1prod = 0.001 / double aux1prodmeso = 0. / double aux1decay = 0.001 / double aux1decaymeso = 0.1 / double aux1transport = 0.036 / double aux_cons = 0. / double aux_breakdown = 0. / double kaux1 = 1 / double kap = 1 / double leaf_tip_source = 0.001 / double sam_efflux = 0.0001 / double sam_auxin = 10. / double # gf_prod = 1e-3 / double # gf_decay = 1e-3 / double sam_auxin_breakdown = 0 / double #label = / label #label = miscellaneous / label van3prod = 0.002 / double van3autokat = 0.1 / double van3sat = 10 / double k2van3 = 0.3 / double #glvprod = 0.0 / double #glvbreakdown = 0. / double label = / label label = Integration parameters / label dt = 0.1 / double rd_dt = 1.0 / double datadir = . / directory movie = false / bool nit = 100000 / int maxt = 1000. / double storage_stride = 10 / int xml_storage_stride = 500 / int rseed = -1 / int #label = / label #label = Parameters for new chemical / label #glvproduction = 0. / double #glvdecay = 0. / double #glvdiffthreshold = 0. / double label = / label label = Meinhardt leaf venation model / label constituous_expansion_limit = 16 / int vessel_inh_level = 1 / double vessel_expansion_rate = 0.25 / double d = 0. / double e = 0. / double f = 0. / double c = 0. / double mu = 0. / double nu = 0. / double rho0 = 0. / double rho1 = 0. / double c0 = 0. / double gamma = 0. / double eps = 0. / double label = / label label = User-defined parameters / label k = 0., 0.0, 0.0, 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0. / doublelist i1 = 0 / int i2 = 0 / int i3 = 0 / int i4 = 0 / int i5 = 0 / int s1 = / string s2 = / string s3 = / string b1 = false / bool b2 = false / bool b3 = false / bool b4 = false / bool dir1 = . / directory dir2 = . / directory export_interval = 0 / int export_fn_prefix = cell. / string