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Location: EI/VirtualLeaf/lib/libxml2/include/libxml/DOCBparser.h - annotation
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In response to referee's comment:
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 | /*
* Summary: old DocBook SGML parser
* Description: interface for a DocBook SGML non-verifying parser
* This code is DEPRECATED, and should not be used anymore.
*
* Copy: See Copyright for the status of this software.
*
* Author: Daniel Veillard
*/
#ifndef __DOCB_PARSER_H__
#define __DOCB_PARSER_H__
#include <libxml/xmlversion.h>
#ifdef LIBXML_DOCB_ENABLED
#include <libxml/parser.h>
#include <libxml/parserInternals.h>
#ifndef IN_LIBXML
#ifdef __GNUC__
#warning "The DOCBparser module has been deprecated in libxml2-2.6.0"
#endif
#endif
#ifdef __cplusplus
extern "C" {
#endif
/*
* Most of the back-end structures from XML and SGML are shared.
*/
typedef xmlParserCtxt docbParserCtxt;
typedef xmlParserCtxtPtr docbParserCtxtPtr;
typedef xmlSAXHandler docbSAXHandler;
typedef xmlSAXHandlerPtr docbSAXHandlerPtr;
typedef xmlParserInput docbParserInput;
typedef xmlParserInputPtr docbParserInputPtr;
typedef xmlDocPtr docbDocPtr;
/*
* There is only few public functions.
*/
XMLPUBFUN int XMLCALL
docbEncodeEntities(unsigned char *out,
int *outlen,
const unsigned char *in,
int *inlen, int quoteChar);
XMLPUBFUN docbDocPtr XMLCALL
docbSAXParseDoc (xmlChar *cur,
const char *encoding,
docbSAXHandlerPtr sax,
void *userData);
XMLPUBFUN docbDocPtr XMLCALL
docbParseDoc (xmlChar *cur,
const char *encoding);
XMLPUBFUN docbDocPtr XMLCALL
docbSAXParseFile (const char *filename,
const char *encoding,
docbSAXHandlerPtr sax,
void *userData);
XMLPUBFUN docbDocPtr XMLCALL
docbParseFile (const char *filename,
const char *encoding);
/**
* Interfaces for the Push mode.
*/
XMLPUBFUN void XMLCALL
docbFreeParserCtxt (docbParserCtxtPtr ctxt);
XMLPUBFUN docbParserCtxtPtr XMLCALL
docbCreatePushParserCtxt(docbSAXHandlerPtr sax,
void *user_data,
const char *chunk,
int size,
const char *filename,
xmlCharEncoding enc);
XMLPUBFUN int XMLCALL
docbParseChunk (docbParserCtxtPtr ctxt,
const char *chunk,
int size,
int terminate);
XMLPUBFUN docbParserCtxtPtr XMLCALL
docbCreateFileParserCtxt(const char *filename,
const char *encoding);
XMLPUBFUN int XMLCALL
docbParseDocument (docbParserCtxtPtr ctxt);
#ifdef __cplusplus
}
#endif
#endif /* LIBXML_DOCB_ENABLED */
#endif /* __DOCB_PARSER_H__ */
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