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Location: EI/VirtualLeaf/lib/libxml2/include/libxml/HTMLtree.h - annotation
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In response to referee's comment:
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
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* Summary: specific APIs to process HTML tree, especially serialization
* Description: this module implements a few function needed to process
* tree in an HTML specific way.
*
* Copy: See Copyright for the status of this software.
*
* Author: Daniel Veillard
*/
#ifndef __HTML_TREE_H__
#define __HTML_TREE_H__
#include <stdio.h>
#include <libxml/xmlversion.h>
#include <libxml/tree.h>
#include <libxml/HTMLparser.h>
#ifdef LIBXML_HTML_ENABLED
#ifdef __cplusplus
extern "C" {
#endif
/**
* HTML_TEXT_NODE:
*
* Macro. A text node in a HTML document is really implemented
* the same way as a text node in an XML document.
*/
#define HTML_TEXT_NODE XML_TEXT_NODE
/**
* HTML_ENTITY_REF_NODE:
*
* Macro. An entity reference in a HTML document is really implemented
* the same way as an entity reference in an XML document.
*/
#define HTML_ENTITY_REF_NODE XML_ENTITY_REF_NODE
/**
* HTML_COMMENT_NODE:
*
* Macro. A comment in a HTML document is really implemented
* the same way as a comment in an XML document.
*/
#define HTML_COMMENT_NODE XML_COMMENT_NODE
/**
* HTML_PRESERVE_NODE:
*
* Macro. A preserved node in a HTML document is really implemented
* the same way as a CDATA section in an XML document.
*/
#define HTML_PRESERVE_NODE XML_CDATA_SECTION_NODE
/**
* HTML_PI_NODE:
*
* Macro. A processing instruction in a HTML document is really implemented
* the same way as a processing instruction in an XML document.
*/
#define HTML_PI_NODE XML_PI_NODE
XMLPUBFUN htmlDocPtr XMLCALL
htmlNewDoc (const xmlChar *URI,
const xmlChar *ExternalID);
XMLPUBFUN htmlDocPtr XMLCALL
htmlNewDocNoDtD (const xmlChar *URI,
const xmlChar *ExternalID);
XMLPUBFUN const xmlChar * XMLCALL
htmlGetMetaEncoding (htmlDocPtr doc);
XMLPUBFUN int XMLCALL
htmlSetMetaEncoding (htmlDocPtr doc,
const xmlChar *encoding);
#ifdef LIBXML_OUTPUT_ENABLED
XMLPUBFUN void XMLCALL
htmlDocDumpMemory (xmlDocPtr cur,
xmlChar **mem,
int *size);
XMLPUBFUN void XMLCALL
htmlDocDumpMemoryFormat (xmlDocPtr cur,
xmlChar **mem,
int *size,
int format);
XMLPUBFUN int XMLCALL
htmlDocDump (FILE *f,
xmlDocPtr cur);
XMLPUBFUN int XMLCALL
htmlSaveFile (const char *filename,
xmlDocPtr cur);
XMLPUBFUN int XMLCALL
htmlNodeDump (xmlBufferPtr buf,
xmlDocPtr doc,
xmlNodePtr cur);
XMLPUBFUN void XMLCALL
htmlNodeDumpFile (FILE *out,
xmlDocPtr doc,
xmlNodePtr cur);
XMLPUBFUN int XMLCALL
htmlNodeDumpFileFormat (FILE *out,
xmlDocPtr doc,
xmlNodePtr cur,
const char *encoding,
int format);
XMLPUBFUN int XMLCALL
htmlSaveFileEnc (const char *filename,
xmlDocPtr cur,
const char *encoding);
XMLPUBFUN int XMLCALL
htmlSaveFileFormat (const char *filename,
xmlDocPtr cur,
const char *encoding,
int format);
XMLPUBFUN void XMLCALL
htmlNodeDumpFormatOutput(xmlOutputBufferPtr buf,
xmlDocPtr doc,
xmlNodePtr cur,
const char *encoding,
int format);
XMLPUBFUN void XMLCALL
htmlDocContentDumpOutput(xmlOutputBufferPtr buf,
xmlDocPtr cur,
const char *encoding);
XMLPUBFUN void XMLCALL
htmlDocContentDumpFormatOutput(xmlOutputBufferPtr buf,
xmlDocPtr cur,
const char *encoding,
int format);
XMLPUBFUN void XMLCALL
htmlNodeDumpOutput (xmlOutputBufferPtr buf,
xmlDocPtr doc,
xmlNodePtr cur,
const char *encoding);
#endif /* LIBXML_OUTPUT_ENABLED */
XMLPUBFUN int XMLCALL
htmlIsBooleanAttr (const xmlChar *name);
#ifdef __cplusplus
}
#endif
#endif /* LIBXML_HTML_ENABLED */
#endif /* __HTML_TREE_H__ */
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