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Location: EI/VirtualLeaf/lib/libxml2/include/libxml/SAX2.h - annotation
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In response to referee's comment:
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
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* Summary: SAX2 parser interface used to build the DOM tree
* Description: those are the default SAX2 interfaces used by
* the library when building DOM tree.
*
* Copy: See Copyright for the status of this software.
*
* Author: Daniel Veillard
*/
#ifndef __XML_SAX2_H__
#define __XML_SAX2_H__
#include <stdio.h>
#include <stdlib.h>
#include <libxml/xmlversion.h>
#include <libxml/parser.h>
#include <libxml/xlink.h>
#ifdef __cplusplus
extern "C" {
#endif
XMLPUBFUN const xmlChar * XMLCALL
xmlSAX2GetPublicId (void *ctx);
XMLPUBFUN const xmlChar * XMLCALL
xmlSAX2GetSystemId (void *ctx);
XMLPUBFUN void XMLCALL
xmlSAX2SetDocumentLocator (void *ctx,
xmlSAXLocatorPtr loc);
XMLPUBFUN int XMLCALL
xmlSAX2GetLineNumber (void *ctx);
XMLPUBFUN int XMLCALL
xmlSAX2GetColumnNumber (void *ctx);
XMLPUBFUN int XMLCALL
xmlSAX2IsStandalone (void *ctx);
XMLPUBFUN int XMLCALL
xmlSAX2HasInternalSubset (void *ctx);
XMLPUBFUN int XMLCALL
xmlSAX2HasExternalSubset (void *ctx);
XMLPUBFUN void XMLCALL
xmlSAX2InternalSubset (void *ctx,
const xmlChar *name,
const xmlChar *ExternalID,
const xmlChar *SystemID);
XMLPUBFUN void XMLCALL
xmlSAX2ExternalSubset (void *ctx,
const xmlChar *name,
const xmlChar *ExternalID,
const xmlChar *SystemID);
XMLPUBFUN xmlEntityPtr XMLCALL
xmlSAX2GetEntity (void *ctx,
const xmlChar *name);
XMLPUBFUN xmlEntityPtr XMLCALL
xmlSAX2GetParameterEntity (void *ctx,
const xmlChar *name);
XMLPUBFUN xmlParserInputPtr XMLCALL
xmlSAX2ResolveEntity (void *ctx,
const xmlChar *publicId,
const xmlChar *systemId);
XMLPUBFUN void XMLCALL
xmlSAX2EntityDecl (void *ctx,
const xmlChar *name,
int type,
const xmlChar *publicId,
const xmlChar *systemId,
xmlChar *content);
XMLPUBFUN void XMLCALL
xmlSAX2AttributeDecl (void *ctx,
const xmlChar *elem,
const xmlChar *fullname,
int type,
int def,
const xmlChar *defaultValue,
xmlEnumerationPtr tree);
XMLPUBFUN void XMLCALL
xmlSAX2ElementDecl (void *ctx,
const xmlChar *name,
int type,
xmlElementContentPtr content);
XMLPUBFUN void XMLCALL
xmlSAX2NotationDecl (void *ctx,
const xmlChar *name,
const xmlChar *publicId,
const xmlChar *systemId);
XMLPUBFUN void XMLCALL
xmlSAX2UnparsedEntityDecl (void *ctx,
const xmlChar *name,
const xmlChar *publicId,
const xmlChar *systemId,
const xmlChar *notationName);
XMLPUBFUN void XMLCALL
xmlSAX2StartDocument (void *ctx);
XMLPUBFUN void XMLCALL
xmlSAX2EndDocument (void *ctx);
#if defined(LIBXML_SAX1_ENABLED) || defined(LIBXML_HTML_ENABLED) || defined(LIBXML_WRITER_ENABLED) || defined(LIBXML_DOCB_ENABLED)
XMLPUBFUN void XMLCALL
xmlSAX2StartElement (void *ctx,
const xmlChar *fullname,
const xmlChar **atts);
XMLPUBFUN void XMLCALL
xmlSAX2EndElement (void *ctx,
const xmlChar *name);
#endif /* LIBXML_SAX1_ENABLED or LIBXML_HTML_ENABLED */
XMLPUBFUN void XMLCALL
xmlSAX2StartElementNs (void *ctx,
const xmlChar *localname,
const xmlChar *prefix,
const xmlChar *URI,
int nb_namespaces,
const xmlChar **namespaces,
int nb_attributes,
int nb_defaulted,
const xmlChar **attributes);
XMLPUBFUN void XMLCALL
xmlSAX2EndElementNs (void *ctx,
const xmlChar *localname,
const xmlChar *prefix,
const xmlChar *URI);
XMLPUBFUN void XMLCALL
xmlSAX2Reference (void *ctx,
const xmlChar *name);
XMLPUBFUN void XMLCALL
xmlSAX2Characters (void *ctx,
const xmlChar *ch,
int len);
XMLPUBFUN void XMLCALL
xmlSAX2IgnorableWhitespace (void *ctx,
const xmlChar *ch,
int len);
XMLPUBFUN void XMLCALL
xmlSAX2ProcessingInstruction (void *ctx,
const xmlChar *target,
const xmlChar *data);
XMLPUBFUN void XMLCALL
xmlSAX2Comment (void *ctx,
const xmlChar *value);
XMLPUBFUN void XMLCALL
xmlSAX2CDataBlock (void *ctx,
const xmlChar *value,
int len);
#ifdef LIBXML_SAX1_ENABLED
XMLPUBFUN int XMLCALL
xmlSAXDefaultVersion (int version);
#endif /* LIBXML_SAX1_ENABLED */
XMLPUBFUN int XMLCALL
xmlSAXVersion (xmlSAXHandler *hdlr,
int version);
XMLPUBFUN void XMLCALL
xmlSAX2InitDefaultSAXHandler (xmlSAXHandler *hdlr,
int warning);
#ifdef LIBXML_HTML_ENABLED
XMLPUBFUN void XMLCALL
xmlSAX2InitHtmlDefaultSAXHandler(xmlSAXHandler *hdlr);
XMLPUBFUN void XMLCALL
htmlDefaultSAXHandlerInit (void);
#endif
#ifdef LIBXML_DOCB_ENABLED
XMLPUBFUN void XMLCALL
xmlSAX2InitDocbDefaultSAXHandler(xmlSAXHandler *hdlr);
XMLPUBFUN void XMLCALL
docbDefaultSAXHandlerInit (void);
#endif
XMLPUBFUN void XMLCALL
xmlDefaultSAXHandlerInit (void);
#ifdef __cplusplus
}
#endif
#endif /* __XML_SAX2_H__ */
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