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Location: EI/VirtualLeaf/lib/libxml2/include/libxml/SAX2.h - annotation

Roeland Merks
In response to referee's comment:

"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in

rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked

automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."

I made the following changes:

- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.


--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
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/*
 * Summary: SAX2 parser interface used to build the DOM tree
 * Description: those are the default SAX2 interfaces used by
 *              the library when building DOM tree.
 *
 * Copy: See Copyright for the status of this software.
 *
 * Author: Daniel Veillard
 */


#ifndef __XML_SAX2_H__
#define __XML_SAX2_H__

#include <stdio.h>
#include <stdlib.h>
#include <libxml/xmlversion.h>
#include <libxml/parser.h>
#include <libxml/xlink.h>

#ifdef __cplusplus
extern "C" {
#endif
XMLPUBFUN const xmlChar * XMLCALL
		xmlSAX2GetPublicId		(void *ctx);
XMLPUBFUN const xmlChar * XMLCALL	
		xmlSAX2GetSystemId		(void *ctx);
XMLPUBFUN void XMLCALL		
		xmlSAX2SetDocumentLocator	(void *ctx,
						 xmlSAXLocatorPtr loc);
    
XMLPUBFUN int XMLCALL		
		xmlSAX2GetLineNumber		(void *ctx);
XMLPUBFUN int XMLCALL		
		xmlSAX2GetColumnNumber		(void *ctx);

XMLPUBFUN int XMLCALL		
		xmlSAX2IsStandalone		(void *ctx);
XMLPUBFUN int XMLCALL		
		xmlSAX2HasInternalSubset	(void *ctx);
XMLPUBFUN int XMLCALL		
		xmlSAX2HasExternalSubset	(void *ctx);

XMLPUBFUN void XMLCALL		
		xmlSAX2InternalSubset		(void *ctx,
						 const xmlChar *name,
						 const xmlChar *ExternalID,
						 const xmlChar *SystemID);
XMLPUBFUN void XMLCALL		
		xmlSAX2ExternalSubset		(void *ctx,
						 const xmlChar *name,
						 const xmlChar *ExternalID,
						 const xmlChar *SystemID);
XMLPUBFUN xmlEntityPtr XMLCALL	
		xmlSAX2GetEntity		(void *ctx,
						 const xmlChar *name);
XMLPUBFUN xmlEntityPtr XMLCALL	
		xmlSAX2GetParameterEntity	(void *ctx,
						 const xmlChar *name);
XMLPUBFUN xmlParserInputPtr XMLCALL 
		xmlSAX2ResolveEntity		(void *ctx,
						 const xmlChar *publicId,
						 const xmlChar *systemId);

XMLPUBFUN void XMLCALL		
		xmlSAX2EntityDecl		(void *ctx,
						 const xmlChar *name,
						 int type,
						 const xmlChar *publicId,
						 const xmlChar *systemId,
						 xmlChar *content);
XMLPUBFUN void XMLCALL		
		xmlSAX2AttributeDecl		(void *ctx,
						 const xmlChar *elem,
						 const xmlChar *fullname,
						 int type,
						 int def,
						 const xmlChar *defaultValue,
						 xmlEnumerationPtr tree);
XMLPUBFUN void XMLCALL		
		xmlSAX2ElementDecl		(void *ctx,
						 const xmlChar *name,
						 int type,
						 xmlElementContentPtr content);
XMLPUBFUN void XMLCALL		
		xmlSAX2NotationDecl		(void *ctx,
						 const xmlChar *name,
						 const xmlChar *publicId,
						 const xmlChar *systemId);
XMLPUBFUN void XMLCALL		
		xmlSAX2UnparsedEntityDecl	(void *ctx,
						 const xmlChar *name,
						 const xmlChar *publicId,
						 const xmlChar *systemId,
						 const xmlChar *notationName);

XMLPUBFUN void XMLCALL		
		xmlSAX2StartDocument		(void *ctx);
XMLPUBFUN void XMLCALL		
		xmlSAX2EndDocument		(void *ctx);
#if defined(LIBXML_SAX1_ENABLED) || defined(LIBXML_HTML_ENABLED) || defined(LIBXML_WRITER_ENABLED) || defined(LIBXML_DOCB_ENABLED)
XMLPUBFUN void XMLCALL		
		xmlSAX2StartElement		(void *ctx,
						 const xmlChar *fullname,
						 const xmlChar **atts);
XMLPUBFUN void XMLCALL		
		xmlSAX2EndElement		(void *ctx,
						 const xmlChar *name);
#endif /* LIBXML_SAX1_ENABLED or LIBXML_HTML_ENABLED */
XMLPUBFUN void XMLCALL
		xmlSAX2StartElementNs		(void *ctx,
						 const xmlChar *localname,
						 const xmlChar *prefix,
						 const xmlChar *URI,
						 int nb_namespaces,
						 const xmlChar **namespaces,
						 int nb_attributes,
						 int nb_defaulted,
						 const xmlChar **attributes);
XMLPUBFUN void XMLCALL
		xmlSAX2EndElementNs		(void *ctx,
						 const xmlChar *localname,
						 const xmlChar *prefix,
						 const xmlChar *URI);
XMLPUBFUN void XMLCALL		
		xmlSAX2Reference		(void *ctx,
						 const xmlChar *name);
XMLPUBFUN void XMLCALL		
		xmlSAX2Characters		(void *ctx,
						 const xmlChar *ch,
						 int len);
XMLPUBFUN void XMLCALL		
		xmlSAX2IgnorableWhitespace	(void *ctx,
						 const xmlChar *ch,
						 int len);
XMLPUBFUN void XMLCALL		
		xmlSAX2ProcessingInstruction	(void *ctx,
						 const xmlChar *target,
						 const xmlChar *data);
XMLPUBFUN void XMLCALL		
		xmlSAX2Comment			(void *ctx,
						 const xmlChar *value);
XMLPUBFUN void XMLCALL		
		xmlSAX2CDataBlock		(void *ctx,
						 const xmlChar *value,
						 int len);

#ifdef LIBXML_SAX1_ENABLED
XMLPUBFUN int XMLCALL
		xmlSAXDefaultVersion		(int version);
#endif /* LIBXML_SAX1_ENABLED */

XMLPUBFUN int XMLCALL
		xmlSAXVersion			(xmlSAXHandler *hdlr,
						 int version);
XMLPUBFUN void XMLCALL		
		xmlSAX2InitDefaultSAXHandler    (xmlSAXHandler *hdlr,
						 int warning);
#ifdef LIBXML_HTML_ENABLED
XMLPUBFUN void XMLCALL		
		xmlSAX2InitHtmlDefaultSAXHandler(xmlSAXHandler *hdlr);
XMLPUBFUN void XMLCALL		
		htmlDefaultSAXHandlerInit	(void);
#endif
#ifdef LIBXML_DOCB_ENABLED
XMLPUBFUN void XMLCALL		
		xmlSAX2InitDocbDefaultSAXHandler(xmlSAXHandler *hdlr);
XMLPUBFUN void XMLCALL		
		docbDefaultSAXHandlerInit	(void);
#endif
XMLPUBFUN void XMLCALL		
		xmlDefaultSAXHandlerInit	(void);
#ifdef __cplusplus
}
#endif
#endif /* __XML_SAX2_H__ */