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Location: EI/VirtualLeaf/lib/libxml2/include/libxml/list.h - annotation
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In response to referee's comment:
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
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* Summary: lists interfaces
* Description: this module implement the list support used in
* various place in the library.
*
* Copy: See Copyright for the status of this software.
*
* Author: Gary Pennington <Gary.Pennington@uk.sun.com>
*/
#ifndef __XML_LINK_INCLUDE__
#define __XML_LINK_INCLUDE__
#include <libxml/xmlversion.h>
#ifdef __cplusplus
extern "C" {
#endif
typedef struct _xmlLink xmlLink;
typedef xmlLink *xmlLinkPtr;
typedef struct _xmlList xmlList;
typedef xmlList *xmlListPtr;
/**
* xmlListDeallocator:
* @lk: the data to deallocate
*
* Callback function used to free data from a list.
*/
typedef void (*xmlListDeallocator) (xmlLinkPtr lk);
/**
* xmlListDataCompare:
* @data0: the first data
* @data1: the second data
*
* Callback function used to compare 2 data.
*
* Returns 0 is equality, -1 or 1 otherwise depending on the ordering.
*/
typedef int (*xmlListDataCompare) (const void *data0, const void *data1);
/**
* xmlListWalker:
* @data: the data found in the list
* @user: extra user provided data to the walker
*
* Callback function used when walking a list with xmlListWalk().
*
* Returns 0 to stop walking the list, 1 otherwise.
*/
typedef int (*xmlListWalker) (const void *data, const void *user);
/* Creation/Deletion */
XMLPUBFUN xmlListPtr XMLCALL
xmlListCreate (xmlListDeallocator deallocator,
xmlListDataCompare compare);
XMLPUBFUN void XMLCALL
xmlListDelete (xmlListPtr l);
/* Basic Operators */
XMLPUBFUN void * XMLCALL
xmlListSearch (xmlListPtr l,
void *data);
XMLPUBFUN void * XMLCALL
xmlListReverseSearch (xmlListPtr l,
void *data);
XMLPUBFUN int XMLCALL
xmlListInsert (xmlListPtr l,
void *data) ;
XMLPUBFUN int XMLCALL
xmlListAppend (xmlListPtr l,
void *data) ;
XMLPUBFUN int XMLCALL
xmlListRemoveFirst (xmlListPtr l,
void *data);
XMLPUBFUN int XMLCALL
xmlListRemoveLast (xmlListPtr l,
void *data);
XMLPUBFUN int XMLCALL
xmlListRemoveAll (xmlListPtr l,
void *data);
XMLPUBFUN void XMLCALL
xmlListClear (xmlListPtr l);
XMLPUBFUN int XMLCALL
xmlListEmpty (xmlListPtr l);
XMLPUBFUN xmlLinkPtr XMLCALL
xmlListFront (xmlListPtr l);
XMLPUBFUN xmlLinkPtr XMLCALL
xmlListEnd (xmlListPtr l);
XMLPUBFUN int XMLCALL
xmlListSize (xmlListPtr l);
XMLPUBFUN void XMLCALL
xmlListPopFront (xmlListPtr l);
XMLPUBFUN void XMLCALL
xmlListPopBack (xmlListPtr l);
XMLPUBFUN int XMLCALL
xmlListPushFront (xmlListPtr l,
void *data);
XMLPUBFUN int XMLCALL
xmlListPushBack (xmlListPtr l,
void *data);
/* Advanced Operators */
XMLPUBFUN void XMLCALL
xmlListReverse (xmlListPtr l);
XMLPUBFUN void XMLCALL
xmlListSort (xmlListPtr l);
XMLPUBFUN void XMLCALL
xmlListWalk (xmlListPtr l,
xmlListWalker walker,
const void *user);
XMLPUBFUN void XMLCALL
xmlListReverseWalk (xmlListPtr l,
xmlListWalker walker,
const void *user);
XMLPUBFUN void XMLCALL
xmlListMerge (xmlListPtr l1,
xmlListPtr l2);
XMLPUBFUN xmlListPtr XMLCALL
xmlListDup (const xmlListPtr old);
XMLPUBFUN int XMLCALL
xmlListCopy (xmlListPtr cur,
const xmlListPtr old);
/* Link operators */
XMLPUBFUN void * XMLCALL
xmlLinkGetData (xmlLinkPtr lk);
/* xmlListUnique() */
/* xmlListSwap */
#ifdef __cplusplus
}
#endif
#endif /* __XML_LINK_INCLUDE__ */
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