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Location: EI/VirtualLeaf/lib/libxml2/include/libxml/pattern.h - annotation

Roeland Merks
In response to referee's comment:

"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in

rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked

automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."

I made the following changes:

- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.


--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
/*
 * Summary: pattern expression handling
 * Description: allows to compile and test pattern expressions for nodes
 *              either in a tree or based on a parser state.
 *
 * Copy: See Copyright for the status of this software.
 *
 * Author: Daniel Veillard
 */

#ifndef __XML_PATTERN_H__
#define __XML_PATTERN_H__

#include <libxml/xmlversion.h>
#include <libxml/tree.h>
#include <libxml/dict.h>

#ifdef LIBXML_PATTERN_ENABLED

#ifdef __cplusplus
extern "C" {
#endif

/**
 * xmlPattern:
 *
 * A compiled (XPath based) pattern to select nodes
 */
typedef struct _xmlPattern xmlPattern;
typedef xmlPattern *xmlPatternPtr;

/**
 * xmlPatternFlags:
 *
 * This is the set of options affecting the behaviour of pattern
 * matching with this module
 *
 */
typedef enum {
    XML_PATTERN_DEFAULT		= 0,	/* simple pattern match */
    XML_PATTERN_XPATH		= 1<<0,	/* standard XPath pattern */
    XML_PATTERN_XSSEL		= 1<<1,	/* XPath subset for schema selector */
    XML_PATTERN_XSFIELD		= 1<<2	/* XPath subset for schema field */
} xmlPatternFlags;

XMLPUBFUN void XMLCALL
			xmlFreePattern		(xmlPatternPtr comp);

XMLPUBFUN void XMLCALL
			xmlFreePatternList	(xmlPatternPtr comp);

XMLPUBFUN xmlPatternPtr XMLCALL
			xmlPatterncompile	(const xmlChar *pattern,
						 xmlDict *dict,
						 int flags,
						 const xmlChar **namespaces);
XMLPUBFUN int XMLCALL
			xmlPatternMatch		(xmlPatternPtr comp,
						 xmlNodePtr node);

/* streaming interfaces */
typedef struct _xmlStreamCtxt xmlStreamCtxt;
typedef xmlStreamCtxt *xmlStreamCtxtPtr;

XMLPUBFUN int XMLCALL
			xmlPatternStreamable	(xmlPatternPtr comp);
XMLPUBFUN int XMLCALL
			xmlPatternMaxDepth	(xmlPatternPtr comp);
XMLPUBFUN int XMLCALL
			xmlPatternMinDepth	(xmlPatternPtr comp);
XMLPUBFUN int XMLCALL
			xmlPatternFromRoot	(xmlPatternPtr comp);
XMLPUBFUN xmlStreamCtxtPtr XMLCALL
			xmlPatternGetStreamCtxt	(xmlPatternPtr comp);
XMLPUBFUN void XMLCALL
			xmlFreeStreamCtxt	(xmlStreamCtxtPtr stream);
XMLPUBFUN int XMLCALL
			xmlStreamPushNode	(xmlStreamCtxtPtr stream,
						 const xmlChar *name,
						 const xmlChar *ns,
						 int nodeType);
XMLPUBFUN int XMLCALL
			xmlStreamPush		(xmlStreamCtxtPtr stream,
						 const xmlChar *name,
						 const xmlChar *ns);
XMLPUBFUN int XMLCALL
			xmlStreamPushAttr	(xmlStreamCtxtPtr stream,
						 const xmlChar *name,
						 const xmlChar *ns);
XMLPUBFUN int XMLCALL
			xmlStreamPop		(xmlStreamCtxtPtr stream);
XMLPUBFUN int XMLCALL
			xmlStreamWantsAnyNode	(xmlStreamCtxtPtr stream);
#ifdef __cplusplus
}
#endif

#endif /* LIBXML_PATTERN_ENABLED */

#endif /* __XML_PATTERN_H__ */