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Location: EI/VirtualLeaf/lib/libxml2/include/libxml/relaxng.h - annotation

Roeland Merks
In response to referee's comment:

"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in

rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked

automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."

I made the following changes:

- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.


--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
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/*
 * Summary: implementation of the Relax-NG validation
 * Description: implementation of the Relax-NG validation
 *
 * Copy: See Copyright for the status of this software.
 *
 * Author: Daniel Veillard
 */

#ifndef __XML_RELAX_NG__
#define __XML_RELAX_NG__

#include <libxml/xmlversion.h>
#include <libxml/hash.h>
#include <libxml/xmlstring.h>

#ifdef LIBXML_SCHEMAS_ENABLED

#ifdef __cplusplus
extern "C" {
#endif

typedef struct _xmlRelaxNG xmlRelaxNG;
typedef xmlRelaxNG *xmlRelaxNGPtr;


/**
 * xmlRelaxNGValidityErrorFunc:
 * @ctx: the validation context
 * @msg: the message
 * @...: extra arguments
 *
 * Signature of an error callback from a Relax-NG validation
 */
typedef void (XMLCDECL *xmlRelaxNGValidityErrorFunc) (void *ctx, const char *msg, ...) LIBXML_ATTR_FORMAT(2,3);

/**
 * xmlRelaxNGValidityWarningFunc:
 * @ctx: the validation context
 * @msg: the message
 * @...: extra arguments
 *
 * Signature of a warning callback from a Relax-NG validation
 */
typedef void (XMLCDECL *xmlRelaxNGValidityWarningFunc) (void *ctx, const char *msg, ...) LIBXML_ATTR_FORMAT(2,3);

/**
 * A schemas validation context
 */
typedef struct _xmlRelaxNGParserCtxt xmlRelaxNGParserCtxt;
typedef xmlRelaxNGParserCtxt *xmlRelaxNGParserCtxtPtr;

typedef struct _xmlRelaxNGValidCtxt xmlRelaxNGValidCtxt;
typedef xmlRelaxNGValidCtxt *xmlRelaxNGValidCtxtPtr;

/*
 * xmlRelaxNGValidErr:
 *
 * List of possible Relax NG validation errors
 */
typedef enum {
    XML_RELAXNG_OK = 0,
    XML_RELAXNG_ERR_MEMORY,
    XML_RELAXNG_ERR_TYPE,
    XML_RELAXNG_ERR_TYPEVAL,
    XML_RELAXNG_ERR_DUPID,
    XML_RELAXNG_ERR_TYPECMP,
    XML_RELAXNG_ERR_NOSTATE,
    XML_RELAXNG_ERR_NODEFINE,
    XML_RELAXNG_ERR_LISTEXTRA,
    XML_RELAXNG_ERR_LISTEMPTY,
    XML_RELAXNG_ERR_INTERNODATA,
    XML_RELAXNG_ERR_INTERSEQ,
    XML_RELAXNG_ERR_INTEREXTRA,
    XML_RELAXNG_ERR_ELEMNAME,
    XML_RELAXNG_ERR_ATTRNAME,
    XML_RELAXNG_ERR_ELEMNONS,
    XML_RELAXNG_ERR_ATTRNONS,
    XML_RELAXNG_ERR_ELEMWRONGNS,
    XML_RELAXNG_ERR_ATTRWRONGNS,
    XML_RELAXNG_ERR_ELEMEXTRANS,
    XML_RELAXNG_ERR_ATTREXTRANS,
    XML_RELAXNG_ERR_ELEMNOTEMPTY,
    XML_RELAXNG_ERR_NOELEM,
    XML_RELAXNG_ERR_NOTELEM,
    XML_RELAXNG_ERR_ATTRVALID,
    XML_RELAXNG_ERR_CONTENTVALID,
    XML_RELAXNG_ERR_EXTRACONTENT,
    XML_RELAXNG_ERR_INVALIDATTR,
    XML_RELAXNG_ERR_DATAELEM,
    XML_RELAXNG_ERR_VALELEM,
    XML_RELAXNG_ERR_LISTELEM,
    XML_RELAXNG_ERR_DATATYPE,
    XML_RELAXNG_ERR_VALUE,
    XML_RELAXNG_ERR_LIST,
    XML_RELAXNG_ERR_NOGRAMMAR,
    XML_RELAXNG_ERR_EXTRADATA,
    XML_RELAXNG_ERR_LACKDATA,
    XML_RELAXNG_ERR_INTERNAL,
    XML_RELAXNG_ERR_ELEMWRONG,
    XML_RELAXNG_ERR_TEXTWRONG
} xmlRelaxNGValidErr;

/*
 * xmlRelaxNGParserFlags:
 *
 * List of possible Relax NG Parser flags
 */
typedef enum {
    XML_RELAXNGP_NONE = 0,
    XML_RELAXNGP_FREE_DOC = 1,
    XML_RELAXNGP_CRNG = 2
} xmlRelaxNGParserFlag;

XMLPUBFUN int XMLCALL
		    xmlRelaxNGInitTypes		(void);
XMLPUBFUN void XMLCALL
		    xmlRelaxNGCleanupTypes	(void);

/*
 * Interfaces for parsing.
 */
XMLPUBFUN xmlRelaxNGParserCtxtPtr XMLCALL
		    xmlRelaxNGNewParserCtxt	(const char *URL);
XMLPUBFUN xmlRelaxNGParserCtxtPtr XMLCALL
		    xmlRelaxNGNewMemParserCtxt	(const char *buffer,
						 int size);
XMLPUBFUN xmlRelaxNGParserCtxtPtr XMLCALL
		    xmlRelaxNGNewDocParserCtxt	(xmlDocPtr doc);

XMLPUBFUN int XMLCALL
		    xmlRelaxParserSetFlag	(xmlRelaxNGParserCtxtPtr ctxt,
						 int flag);

XMLPUBFUN void XMLCALL
		    xmlRelaxNGFreeParserCtxt	(xmlRelaxNGParserCtxtPtr ctxt);
XMLPUBFUN void XMLCALL
		    xmlRelaxNGSetParserErrors(xmlRelaxNGParserCtxtPtr ctxt,
					 xmlRelaxNGValidityErrorFunc err,
					 xmlRelaxNGValidityWarningFunc warn,
					 void *ctx);
XMLPUBFUN int XMLCALL
		    xmlRelaxNGGetParserErrors(xmlRelaxNGParserCtxtPtr ctxt,
					 xmlRelaxNGValidityErrorFunc *err,
					 xmlRelaxNGValidityWarningFunc *warn,
					 void **ctx);
XMLPUBFUN void XMLCALL
		    xmlRelaxNGSetParserStructuredErrors(
					 xmlRelaxNGParserCtxtPtr ctxt,
					 xmlStructuredErrorFunc serror,
					 void *ctx);
XMLPUBFUN xmlRelaxNGPtr XMLCALL
		    xmlRelaxNGParse		(xmlRelaxNGParserCtxtPtr ctxt);
XMLPUBFUN void XMLCALL
		    xmlRelaxNGFree		(xmlRelaxNGPtr schema);
#ifdef LIBXML_OUTPUT_ENABLED
XMLPUBFUN void XMLCALL
		    xmlRelaxNGDump		(FILE *output,
					 xmlRelaxNGPtr schema);
XMLPUBFUN void XMLCALL
		    xmlRelaxNGDumpTree	(FILE * output,
					 xmlRelaxNGPtr schema);
#endif /* LIBXML_OUTPUT_ENABLED */
/*
 * Interfaces for validating
 */
XMLPUBFUN void XMLCALL
		    xmlRelaxNGSetValidErrors(xmlRelaxNGValidCtxtPtr ctxt,
					 xmlRelaxNGValidityErrorFunc err,
					 xmlRelaxNGValidityWarningFunc warn,
					 void *ctx);
XMLPUBFUN int XMLCALL
		    xmlRelaxNGGetValidErrors(xmlRelaxNGValidCtxtPtr ctxt,
					 xmlRelaxNGValidityErrorFunc *err,
					 xmlRelaxNGValidityWarningFunc *warn,
					 void **ctx);
XMLPUBFUN void XMLCALL
			xmlRelaxNGSetValidStructuredErrors(xmlRelaxNGValidCtxtPtr ctxt,
					  xmlStructuredErrorFunc serror, void *ctx);
XMLPUBFUN xmlRelaxNGValidCtxtPtr XMLCALL
		    xmlRelaxNGNewValidCtxt	(xmlRelaxNGPtr schema);
XMLPUBFUN void XMLCALL
		    xmlRelaxNGFreeValidCtxt	(xmlRelaxNGValidCtxtPtr ctxt);
XMLPUBFUN int XMLCALL
		    xmlRelaxNGValidateDoc	(xmlRelaxNGValidCtxtPtr ctxt,
						 xmlDocPtr doc);
/*
 * Interfaces for progressive validation when possible
 */
XMLPUBFUN int XMLCALL
		    xmlRelaxNGValidatePushElement	(xmlRelaxNGValidCtxtPtr ctxt,
					 xmlDocPtr doc,
					 xmlNodePtr elem);
XMLPUBFUN int XMLCALL
		    xmlRelaxNGValidatePushCData	(xmlRelaxNGValidCtxtPtr ctxt,
					 const xmlChar *data,
					 int len);
XMLPUBFUN int XMLCALL
		    xmlRelaxNGValidatePopElement	(xmlRelaxNGValidCtxtPtr ctxt,
					 xmlDocPtr doc,
					 xmlNodePtr elem);
XMLPUBFUN int XMLCALL
		    xmlRelaxNGValidateFullElement	(xmlRelaxNGValidCtxtPtr ctxt,
					 xmlDocPtr doc,
					 xmlNodePtr elem);

#ifdef __cplusplus
}
#endif

#endif /* LIBXML_SCHEMAS_ENABLED */

#endif /* __XML_RELAX_NG__ */