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Location: EI/VirtualLeaf/lib/libxml2/include/libxml/schematron.h - annotation

Roeland Merks
In response to referee's comment:

"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in

rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked

automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."

I made the following changes:

- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.


--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
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/*
 * Summary: XML Schemastron implementation
 * Description: interface to the XML Schematron validity checking.
 *
 * Copy: See Copyright for the status of this software.
 *
 * Author: Daniel Veillard
 */


#ifndef __XML_SCHEMATRON_H__
#define __XML_SCHEMATRON_H__

#include <libxml/xmlversion.h>

#ifdef LIBXML_SCHEMATRON_ENABLED

#include <libxml/tree.h>

#ifdef __cplusplus
extern "C" {
#endif

typedef enum {
    XML_SCHEMATRON_OUT_QUIET = 1 << 0,	/* quiet no report */
    XML_SCHEMATRON_OUT_TEXT = 1 << 1,	/* build a textual report */
    XML_SCHEMATRON_OUT_XML = 1 << 2,	/* output SVRL */
    XML_SCHEMATRON_OUT_ERROR = 1 << 3,  /* output via xmlStructuredErrorFunc */
    XML_SCHEMATRON_OUT_FILE = 1 << 8,	/* output to a file descriptor */
    XML_SCHEMATRON_OUT_BUFFER = 1 << 9,	/* output to a buffer */
    XML_SCHEMATRON_OUT_IO = 1 << 10	/* output to I/O mechanism */
} xmlSchematronValidOptions;

/**
 * The schemas related types are kept internal
 */
typedef struct _xmlSchematron xmlSchematron;
typedef xmlSchematron *xmlSchematronPtr;

/**
 * xmlSchematronValidityErrorFunc:
 * @ctx: the validation context
 * @msg: the message
 * @...: extra arguments
 *
 * Signature of an error callback from a Schematron validation
 */
typedef void (*xmlSchematronValidityErrorFunc) (void *ctx, const char *msg, ...);

/**
 * xmlSchematronValidityWarningFunc:
 * @ctx: the validation context
 * @msg: the message
 * @...: extra arguments
 *
 * Signature of a warning callback from a Schematron validation
 */
typedef void (*xmlSchematronValidityWarningFunc) (void *ctx, const char *msg, ...);

/**
 * A schemas validation context
 */
typedef struct _xmlSchematronParserCtxt xmlSchematronParserCtxt;
typedef xmlSchematronParserCtxt *xmlSchematronParserCtxtPtr;

typedef struct _xmlSchematronValidCtxt xmlSchematronValidCtxt;
typedef xmlSchematronValidCtxt *xmlSchematronValidCtxtPtr;

/*
 * Interfaces for parsing.
 */
XMLPUBFUN xmlSchematronParserCtxtPtr XMLCALL 
	    xmlSchematronNewParserCtxt	(const char *URL);
XMLPUBFUN xmlSchematronParserCtxtPtr XMLCALL 
	    xmlSchematronNewMemParserCtxt(const char *buffer,
					 int size);
XMLPUBFUN xmlSchematronParserCtxtPtr XMLCALL
	    xmlSchematronNewDocParserCtxt(xmlDocPtr doc);
XMLPUBFUN void XMLCALL		
	    xmlSchematronFreeParserCtxt	(xmlSchematronParserCtxtPtr ctxt);
/*****
XMLPUBFUN void XMLCALL		
	    xmlSchematronSetParserErrors(xmlSchematronParserCtxtPtr ctxt,
					 xmlSchematronValidityErrorFunc err,
					 xmlSchematronValidityWarningFunc warn,
					 void *ctx);
XMLPUBFUN int XMLCALL
		xmlSchematronGetParserErrors(xmlSchematronParserCtxtPtr ctxt,
					xmlSchematronValidityErrorFunc * err,
					xmlSchematronValidityWarningFunc * warn,
					void **ctx);
XMLPUBFUN int XMLCALL
		xmlSchematronIsValid	(xmlSchematronValidCtxtPtr ctxt);
 *****/
XMLPUBFUN xmlSchematronPtr XMLCALL	
	    xmlSchematronParse		(xmlSchematronParserCtxtPtr ctxt);
XMLPUBFUN void XMLCALL		
	    xmlSchematronFree		(xmlSchematronPtr schema);
/*
 * Interfaces for validating
 */
XMLPUBFUN void XMLCALL
	    xmlSchematronSetValidStructuredErrors(
	                                  xmlSchematronValidCtxtPtr ctxt,
					  xmlStructuredErrorFunc serror,
					  void *ctx);
/******
XMLPUBFUN void XMLCALL		
	    xmlSchematronSetValidErrors	(xmlSchematronValidCtxtPtr ctxt,
					 xmlSchematronValidityErrorFunc err,
					 xmlSchematronValidityWarningFunc warn,
					 void *ctx);
XMLPUBFUN int XMLCALL
	    xmlSchematronGetValidErrors	(xmlSchematronValidCtxtPtr ctxt,
					 xmlSchematronValidityErrorFunc *err,
					 xmlSchematronValidityWarningFunc *warn,
					 void **ctx);
XMLPUBFUN int XMLCALL
	    xmlSchematronSetValidOptions(xmlSchematronValidCtxtPtr ctxt,
					 int options);
XMLPUBFUN int XMLCALL
	    xmlSchematronValidCtxtGetOptions(xmlSchematronValidCtxtPtr ctxt);
XMLPUBFUN int XMLCALL
            xmlSchematronValidateOneElement (xmlSchematronValidCtxtPtr ctxt,
			                 xmlNodePtr elem);
 *******/

XMLPUBFUN xmlSchematronValidCtxtPtr XMLCALL	
	    xmlSchematronNewValidCtxt	(xmlSchematronPtr schema,
	    				 int options);
XMLPUBFUN void XMLCALL			
	    xmlSchematronFreeValidCtxt	(xmlSchematronValidCtxtPtr ctxt);
XMLPUBFUN int XMLCALL			
	    xmlSchematronValidateDoc	(xmlSchematronValidCtxtPtr ctxt,
					 xmlDocPtr instance);

#ifdef __cplusplus
}
#endif

#endif /* LIBXML_SCHEMATRON_ENABLED */
#endif /* __XML_SCHEMATRON_H__ */