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Location: EI/VirtualLeaf/lib/libxml2/include/libxml/uri.h - annotation
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In response to referee's comment:
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 | /**
* Summary: library of generic URI related routines
* Description: library of generic URI related routines
* Implements RFC 2396
*
* Copy: See Copyright for the status of this software.
*
* Author: Daniel Veillard
*/
#ifndef __XML_URI_H__
#define __XML_URI_H__
#include <libxml/xmlversion.h>
#include <libxml/tree.h>
#ifdef __cplusplus
extern "C" {
#endif
/**
* xmlURI:
*
* A parsed URI reference. This is a struct containing the various fields
* as described in RFC 2396 but separated for further processing.
*
* Note: query is a deprecated field which is incorrectly unescaped.
* query_raw takes precedence over query if the former is set.
* See: http://mail.gnome.org/archives/xml/2007-April/thread.html#00127
*/
typedef struct _xmlURI xmlURI;
typedef xmlURI *xmlURIPtr;
struct _xmlURI {
char *scheme; /* the URI scheme */
char *opaque; /* opaque part */
char *authority; /* the authority part */
char *server; /* the server part */
char *user; /* the user part */
int port; /* the port number */
char *path; /* the path string */
char *query; /* the query string (deprecated - use with caution) */
char *fragment; /* the fragment identifier */
int cleanup; /* parsing potentially unclean URI */
char *query_raw; /* the query string (as it appears in the URI) */
};
/*
* This function is in tree.h:
* xmlChar * xmlNodeGetBase (xmlDocPtr doc,
* xmlNodePtr cur);
*/
XMLPUBFUN xmlURIPtr XMLCALL
xmlCreateURI (void);
XMLPUBFUN xmlChar * XMLCALL
xmlBuildURI (const xmlChar *URI,
const xmlChar *base);
XMLPUBFUN xmlChar * XMLCALL
xmlBuildRelativeURI (const xmlChar *URI,
const xmlChar *base);
XMLPUBFUN xmlURIPtr XMLCALL
xmlParseURI (const char *str);
XMLPUBFUN xmlURIPtr XMLCALL
xmlParseURIRaw (const char *str,
int raw);
XMLPUBFUN int XMLCALL
xmlParseURIReference (xmlURIPtr uri,
const char *str);
XMLPUBFUN xmlChar * XMLCALL
xmlSaveUri (xmlURIPtr uri);
XMLPUBFUN void XMLCALL
xmlPrintURI (FILE *stream,
xmlURIPtr uri);
XMLPUBFUN xmlChar * XMLCALL
xmlURIEscapeStr (const xmlChar *str,
const xmlChar *list);
XMLPUBFUN char * XMLCALL
xmlURIUnescapeString (const char *str,
int len,
char *target);
XMLPUBFUN int XMLCALL
xmlNormalizeURIPath (char *path);
XMLPUBFUN xmlChar * XMLCALL
xmlURIEscape (const xmlChar *str);
XMLPUBFUN void XMLCALL
xmlFreeURI (xmlURIPtr uri);
XMLPUBFUN xmlChar* XMLCALL
xmlCanonicPath (const xmlChar *path);
XMLPUBFUN xmlChar* XMLCALL
xmlPathToURI (const xmlChar *path);
#ifdef __cplusplus
}
#endif
#endif /* __XML_URI_H__ */
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