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Location: EI/VirtualLeaf/lib/libxml2/include/libxml/xpointer.h - annotation

Roeland Merks
In response to referee's comment:

"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in

rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked

automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."

I made the following changes:

- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.


--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
/*
 * Summary: API to handle XML Pointers
 * Description: API to handle XML Pointers
 * Base implementation was made accordingly to
 * W3C Candidate Recommendation 7 June 2000
 * http://www.w3.org/TR/2000/CR-xptr-20000607
 *
 * Added support for the element() scheme described in:
 * W3C Proposed Recommendation 13 November 2002
 * http://www.w3.org/TR/2002/PR-xptr-element-20021113/  
 *
 * Copy: See Copyright for the status of this software.
 *
 * Author: Daniel Veillard
 */

#ifndef __XML_XPTR_H__
#define __XML_XPTR_H__

#include <libxml/xmlversion.h>

#ifdef LIBXML_XPTR_ENABLED

#include <libxml/tree.h>
#include <libxml/xpath.h>

#ifdef __cplusplus
extern "C" {
#endif

/*
 * A Location Set
 */
typedef struct _xmlLocationSet xmlLocationSet;
typedef xmlLocationSet *xmlLocationSetPtr;
struct _xmlLocationSet {
    int locNr;		      /* number of locations in the set */
    int locMax;		      /* size of the array as allocated */
    xmlXPathObjectPtr *locTab;/* array of locations */
};

/*
 * Handling of location sets.
 */

XMLPUBFUN xmlLocationSetPtr XMLCALL			
		    xmlXPtrLocationSetCreate	(xmlXPathObjectPtr val);
XMLPUBFUN void XMLCALL			
		    xmlXPtrFreeLocationSet	(xmlLocationSetPtr obj);
XMLPUBFUN xmlLocationSetPtr XMLCALL	
		    xmlXPtrLocationSetMerge	(xmlLocationSetPtr val1,
						 xmlLocationSetPtr val2);
XMLPUBFUN xmlXPathObjectPtr XMLCALL	
		    xmlXPtrNewRange		(xmlNodePtr start,
						 int startindex,
						 xmlNodePtr end,
						 int endindex);
XMLPUBFUN xmlXPathObjectPtr XMLCALL	
		    xmlXPtrNewRangePoints	(xmlXPathObjectPtr start,
						 xmlXPathObjectPtr end);
XMLPUBFUN xmlXPathObjectPtr XMLCALL	
		    xmlXPtrNewRangeNodePoint	(xmlNodePtr start,
						 xmlXPathObjectPtr end);
XMLPUBFUN xmlXPathObjectPtr XMLCALL	
		    xmlXPtrNewRangePointNode	(xmlXPathObjectPtr start,
						 xmlNodePtr end);
XMLPUBFUN xmlXPathObjectPtr XMLCALL			
		    xmlXPtrNewRangeNodes	(xmlNodePtr start,
						 xmlNodePtr end);
XMLPUBFUN xmlXPathObjectPtr XMLCALL	
		    xmlXPtrNewLocationSetNodes	(xmlNodePtr start,
						 xmlNodePtr end);
XMLPUBFUN xmlXPathObjectPtr XMLCALL	
		    xmlXPtrNewLocationSetNodeSet(xmlNodeSetPtr set);
XMLPUBFUN xmlXPathObjectPtr XMLCALL	
		    xmlXPtrNewRangeNodeObject	(xmlNodePtr start,
						 xmlXPathObjectPtr end);
XMLPUBFUN xmlXPathObjectPtr XMLCALL	
		    xmlXPtrNewCollapsedRange	(xmlNodePtr start);
XMLPUBFUN void XMLCALL			
		    xmlXPtrLocationSetAdd	(xmlLocationSetPtr cur,
						 xmlXPathObjectPtr val);
XMLPUBFUN xmlXPathObjectPtr XMLCALL	
		    xmlXPtrWrapLocationSet	(xmlLocationSetPtr val);
XMLPUBFUN void XMLCALL			
		    xmlXPtrLocationSetDel	(xmlLocationSetPtr cur,
						 xmlXPathObjectPtr val);
XMLPUBFUN void XMLCALL			
		    xmlXPtrLocationSetRemove	(xmlLocationSetPtr cur,
						 int val);

/*
 * Functions.
 */
XMLPUBFUN xmlXPathContextPtr XMLCALL	
		    xmlXPtrNewContext		(xmlDocPtr doc,
						 xmlNodePtr here,
						 xmlNodePtr origin);
XMLPUBFUN xmlXPathObjectPtr XMLCALL	
		    xmlXPtrEval			(const xmlChar *str,
						 xmlXPathContextPtr ctx);
XMLPUBFUN void XMLCALL					    
		    xmlXPtrRangeToFunction	(xmlXPathParserContextPtr ctxt,
       						 int nargs);
XMLPUBFUN xmlNodePtr XMLCALL		
		    xmlXPtrBuildNodeList	(xmlXPathObjectPtr obj);
XMLPUBFUN void XMLCALL		
		    xmlXPtrEvalRangePredicate	(xmlXPathParserContextPtr ctxt);
#ifdef __cplusplus
}
#endif

#endif /* LIBXML_XPTR_ENABLED */
#endif /* __XML_XPTR_H__ */