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In response to referee's comment:
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 32ba6ee9c7d9 21afbd2a2c01 21afbd2a2c01 32ba6ee9c7d9 21afbd2a2c01 21afbd2a2c01 32ba6ee9c7d9 21afbd2a2c01 21afbd2a2c01 32ba6ee9c7d9 21afbd2a2c01 21afbd2a2c01 32ba6ee9c7d9 21afbd2a2c01 21afbd2a2c01 32ba6ee9c7d9 21afbd2a2c01 21afbd2a2c01 32ba6ee9c7d9 21afbd2a2c01 21afbd2a2c01 32ba6ee9c7d9 21afbd2a2c01 21afbd2a2c01 32ba6ee9c7d9 21afbd2a2c01 21afbd2a2c01 32ba6ee9c7d9 32ba6ee9c7d9 32ba6ee9c7d9 32ba6ee9c7d9 32ba6ee9c7d9 32ba6ee9c7d9 32ba6ee9c7d9 32ba6ee9c7d9 32ba6ee9c7d9 21afbd2a2c01 21afbd2a2c01 | # $Id$
# Set an environment varible $(MAKE) to the name of the make command
# on your machine, e.g. 'make' on UNIX and 'mingw32-make' on windows.
# Fallback default is UNIX make.
ifeq ($(MAKE),)
MAKE=make
endif
all: tutorial_0 tutorial_1A tutorial_1B tutorial_1C tutorial_1D tutorial_2 tutorial_3 tutorial_4 tutorial_5
tutorial_0:
$(MAKE) -C Tutorial0 -f Makefile
tutorial_1A:
$(MAKE) -C Tutorial1A -f Makefile
tutorial_1B:
$(MAKE) -C Tutorial1B -f Makefile
tutorial_1C:
$(MAKE) -C Tutorial1C -f Makefile
tutorial_1D:
$(MAKE) -C Tutorial1D -f Makefile
tutorial_2:
$(MAKE) -C Tutorial2 -f Makefile
tutorial_3:
$(MAKE) -C Tutorial3 -f Makefile
tutorial_4:
$(MAKE) -C Tutorial4 -f Makefile
tutorial_5:
$(MAKE) -C Tutorial5 -f Makefile
clean:
$(MAKE) -C Tutorial0 -f Makefile clean
$(MAKE) -C Tutorial1A -f Makefile clean
$(MAKE) -C Tutorial1B -f Makefile clean
$(MAKE) -C Tutorial1C -f Makefile clean
$(MAKE) -C Tutorial1D -f Makefile clean
$(MAKE) -C Tutorial2 -f Makefile clean
$(MAKE) -C Tutorial3 -f Makefile clean
$(MAKE) -C Tutorial4 -f Makefile clean
$(MAKE) -C Tutorial5 -f Makefile clean
# finis
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