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In response to referee's comment:
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
67230a3743ca 67230a3743ca 67230a3743ca 67230a3743ca caa535c40937 caa535c40937 caa535c40937 caa535c40937 caa535c40937 caa535c40937 caa535c40937 ae58c51ca8dd ae58c51ca8dd ae58c51ca8dd ae58c51ca8dd ae58c51ca8dd ae58c51ca8dd ae58c51ca8dd 59e38e5f05d2 59e38e5f05d2 59e38e5f05d2 59e38e5f05d2 59e38e5f05d2 59e38e5f05d2 59e38e5f05d2 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 137d9d3a313a 137d9d3a313a 137d9d3a313a 137d9d3a313a 137d9d3a313a 137d9d3a313a 137d9d3a313a 137d9d3a313a 137d9d3a313a 137d9d3a313a 137d9d3a313a 137d9d3a313a 137d9d3a313a 3f0977faba37 3f0977faba37 3f0977faba37 3f0977faba37 31e2c8add85c 31e2c8add85c 31e2c8add85c 31e2c8add85c 31e2c8add85c 31e2c8add85c 31e2c8add85c | 2010-10-18 <guravage@caterpie.sen.cwi.nl>
* Makefile (Makefile.plugin_test): Removed -makefile qmake option.
2010-06-25 <guravage@caterpie.sen.cwi.nl>
* plugin_auxingrowth.pro: Added -Wno-write-strings and -Wno-unused-parameter to QMAKE_CXXFLAGS.
* plugin_test.pro: Ditto.
* plugin_meinhardt.pro: Ditto.
2010-06-24 <guravage@caterpie.sen.cwi.nl>
* plugin_auxingrowth.pro: Use correct library path.
* plugin_meinhardt.pro: Ditto.
* plugin_test.pro: Ditto.
2010-06-23 <guravage@caterpie.sen.cwi.nl>
* auxingrowthplugin.cpp: Removed NULL assignments to unused variables.
* meinhardtplugin.cpp: Ditto.
* testplugin.cpp: Ditto.
2010-06-22 <guravage@caterpie.sen.cwi.nl>
* Makefile (clean): Add windows equivalent of UNIX touch.
2010-06-18 <guravage@caterpie.sen.cwi.nl>
* plugin_auxingrowth.pro: Changed default LIBXML2DIR, LIBICONVDIR and LIBZDIR to corresponding distribution lib directories.
* plugin_meinhardt.pro: Ditto.
* plugin_test.pro: Ditto.
* Makefile (clean): add if stmt not to `touch` on windows.
2010-06-15 <guravage@caterpie.sen.cwi.nl>
* testplugin.cpp (CelltoCellTransport) Use NULL assignment merely to obviate compilation warnings.
(WallDynamics): Ditto.
(CellDynamics): Ditto.
(OnDivide): Ditto.
* meinhardtplugin.cpp (OnDivide): Use NULL assignment merely to obviate compilation warnings.
* (WallDynamics): Ditto.
* auxingrowthplugin.cpp (OnDivide): Use NULL assignment merely to obviate compilation warnings.
2010-06-03 <guravage@caterpie.sen.cwi.nl>
* Makefile: Added top-level Makefile.
2010-05-10 <guravage@caterpie.sen.cwi.nl>
* plugin_test.pro: Added -fPIC option to QMAKE_CXXFLAGS.
* plugin_meinhardt.pro: ditto
* plugin_auxingrowth.pro: ditto
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