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In response to referee's comment:
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
3f0977faba37 5564fc0d72bc 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 bc383c25c970 23dfaeaae8f8 23dfaeaae8f8 23dfaeaae8f8 23dfaeaae8f8 23dfaeaae8f8 18e4f7f50259 5564fc0d72bc 5564fc0d72bc bc383c25c970 5564fc0d72bc 5564fc0d72bc 67230a3743ca 5564fc0d72bc 5564fc0d72bc bc383c25c970 5564fc0d72bc 5564fc0d72bc 67230a3743ca 5564fc0d72bc 5564fc0d72bc bc383c25c970 5564fc0d72bc 5564fc0d72bc 67230a3743ca 5564fc0d72bc 5564fc0d72bc bc383c25c970 bc383c25c970 bc383c25c970 bc383c25c970 8b6e1d8e0734 8b6e1d8e0734 8b6e1d8e0734 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 bc383c25c970 5564fc0d72bc 5564fc0d72bc | # $Id$
# Set an environment varible $(MAKE) to the name of the make command
# on your machine, e.g. 'make' on UNIX and 'mingw32-make' on windows.
# Fallback default is UNIX make.
ifeq ($(MAKE),)
MAKE=make
endif
# Ditto for QMAKE
ifeq ($(QMAKE),)
QMAKE=qmake
endif
all: plugin_auxingrowth plugin_meinhardt plugin_test
plugin_auxingrowth: Makefile.plugin_auxingrowth
$(MAKE) -f Makefile.plugin_auxingrowth
Makefile.plugin_auxingrowth: plugin_auxingrowth.pro
$(QMAKE) -o $@ $<
plugin_meinhardt: Makefile.plugin_meinhardt
$(MAKE) -f Makefile.plugin_meinhardt
Makefile.plugin_meinhardt: plugin_meinhardt.pro
$(QMAKE) -o $@ $<
plugin_test: Makefile.plugin_test
$(MAKE) -f Makefile.plugin_test
Makefile.plugin_test: plugin_test.pro
$(QMAKE) -o $@ $<
clean:
$(MAKE) -f Makefile.plugin_auxingrowth clean
$(MAKE) -f Makefile.plugin_meinhardt clean
$(MAKE) -f Makefile.plugin_test clean
ifeq ($(MAKE),make)
touch plugin_auxingrowth.pro
touch plugin_meinhardt.pro
touch plugin_test.pro
else
copy /b plugin_auxingrowth.pro +,,
copy /b plugin_meinhardt.pro +,,
copy /b plugin_test.pro +,,
endif
#finis
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