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In response to referee's comment:
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e b2521b04d47d b2521b04d47d 41d0f8948f63 41d0f8948f63 79f94eaa3b9e 413a4067bfff 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 41d0f8948f63 caa535c40937 caa535c40937 41d0f8948f63 b2521b04d47d b2521b04d47d 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 413a4067bfff 31e2c8add85c 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e 79f94eaa3b9e ae58c51ca8dd ae58c51ca8dd ae58c51ca8dd 413a4067bfff 7e16256a76f6 41d0f8948f63 bc8eb2c3f85f 79f94eaa3b9e 79f94eaa3b9e 096de6bb6fab | #
# $Id$
#
# This file is part of the Virtual Leaf.
#
# The Virtual Leaf is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# The Virtual Leaf is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with the Virtual Leaf. If not, see <http://www.gnu.org/licenses/>.
#
# Copyright 2010 Roeland Merks.
#
CONFIG += release
CONFIG -= debug
CONFIG += plugin
BINDIR = ../../bin
LIBDIR = ../../lib
DEFINES = QTGRAPHICS # VLEAFPLUGIN
DESTDIR = $${BINDIR}/models
TARGET = test
HEADERS = ../simplugin.h $${TARGET}plugin.h
QMAKE_CXXFLAGS += -fexceptions -I..
QMAKE_CXXFLAGS += -Wno-write-strings
QMAKE_CXXFLAGS += -Wno-unused-parameter
QMAKE_CXXFLAGS_DEBUG += -g3
QMAKE_CXXFLAGS_DEBUG += -DQDEBUG
QT += qt3support
SOURCES = $${TARGET}plugin.cpp
TEMPLATE = lib
unix {
LIBS += -L$${LIBDIR} -lvleaf
QMAKE_CXXFLAGS += -fPIC -I/usr/include/libxml2
QMAKE_LFLAGS += -fPIC
}
win32 {
LIBXML2DIR = $${LIBDIR}\libxml2
LIBICONVDIR = $${LIBDIR}\libiconv
LIBZDIR = $${LIBDIR}\libz
LIBS += -L$${LIBDIR} -Llib -lvleaf
QMAKE_CXXFLAGS += -DLIBXML_STATIC
QMAKE_CXXFLAGS += -I$${LIBXML2DIR}\include -I$${LIBICONVDIR}\include -I$${LIBZDIR}\include
}
# finis
|