Files @ 6bcb69712a0e
Branch filter:

Location: EI/VirtualLeaf/src/warning.cpp - annotation

Roeland Merks
In response to referee's comment:

"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in

rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked

automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."

I made the following changes:

- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.


--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
15d600891648
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
15d600891648
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
782330072e62
79f94eaa3b9e
782330072e62
782330072e62
782330072e62
782330072e62
782330072e62
782330072e62
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
782330072e62
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
782330072e62
79f94eaa3b9e
782330072e62
6d2e1692ec10
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
782330072e62
79f94eaa3b9e
782330072e62
782330072e62
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
782330072e62
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
782330072e62
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
782330072e62
79f94eaa3b9e
782330072e62
6d2e1692ec10
782330072e62
6d2e1692ec10
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
782330072e62
782330072e62
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
782330072e62
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
782330072e62
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
782330072e62
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
782330072e62
79f94eaa3b9e
79f94eaa3b9e
782330072e62
79f94eaa3b9e
79f94eaa3b9e
782330072e62
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
782330072e62
782330072e62
79f94eaa3b9e
79f94eaa3b9e
79f94eaa3b9e
782330072e62
782330072e62
/*
 *
 *  This file is part of the Virtual Leaf.
 *
 *  VirtualLeaf is free software: you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation, either version 3 of the License, or
 *  (at your option) any later version.
 *
 *  VirtualLeaf is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License
 *  along with the Virtual Leaf.  If not, see <http://www.gnu.org/licenses/>.
 *
 *  Copyright 2010 Roeland Merks.
 *
 */

#include <string>
#include <stdarg.h>
#include <stdio.h>
#include <stdlib.h>
#include <iostream>
#include "warning.h"
#ifdef QTGRAPHICS
#include <qapplication.h>
#include "canvas.h"
#endif
#include <QMessageBox>

static const std::string _module_id("$Id$");

int Quiet=0;

/*
 * ERROR: scream and die quickly.
 */

#ifndef QTGRAPHICS
void MyWarning::error(char * fmt, ...)
{
  va_list ap;

  va_start(ap, fmt);
  vfprintf(stderr, fmt, ap);		/* invoke interface to printf       */
  fprintf(stderr,"\n");     /* automatic \n by Roeland */
  fflush(stderr);			/* drain std error buffer 	    */
  va_end(ap);
  exit(1);				/* quit with error status	    */
}
#else
//#include <qmessagebox.h>
#include "UniqueMessage.h"
void MyWarning::error(const char *fmt, ...)
{
  va_list ap;
  if (Quiet) return;
  char *message = new char[1000];

  va_start(ap, fmt);
  vsnprintf(message, 999, fmt, ap);		/* invoke interface to printf       */
  va_end(ap);

  QString qmess(message);

  if (qApp->type()==QApplication::Tty) {
    // batch mode: print the message to stderr
    fprintf(stderr, "Fatal error: %s\n",qmess.toStdString().c_str());
    exit(1);
  } else { // issue a dialog box
    /* Solve this with signal and slot...! */
    //extern MainBase *main_window;
    //((Main *)main_window)->stopSimulation();

    QMessageBox::critical( 0 , "Fatal error", qmess, QMessageBox::Abort, QMessageBox::NoButton, QMessageBox::NoButton );
    fprintf(stderr, "Error: %s\n",qmess.toStdString().c_str());
    QCoreApplication::exit(1);
    std::exit(1);
  }
  delete[] message;
}
#endif


/*
 * EPRINTF: scream, but don't die yet.
 * Roeland changed this to "warning" (21/10/1998)
 * and added an automatic "\n"
 */

#ifndef QTGRAPHICS
void MyWarning::warning(const char * fmt, ...)
{
  va_list ap;
  if (Quiet) return;

  va_start(ap, fmt);
  vfprintf(stderr, fmt, ap);		/* invoke interface to printf       */
  fprintf(stderr,"\n");     /* automatic \n by Roeland */
  fflush(stderr);			/* drain std error buffer 	    */
  va_end(ap);
}
#else 

#include <qmessagebox.h>


void MyWarning::warning(const char *fmt, ...)
{
  va_list ap;
  if (Quiet) return;
  char *message = new char[1000];

  va_start(ap, fmt);
  vsnprintf(message, 999, fmt, ap);		/* invoke interface to printf       */
  va_end(ap);

  QString qmess(message);

  //  bool batch = false;

  if (qApp->type()==QApplication::Tty) {
    // batch mode: print the message to stderr
    fprintf(stderr, "Warning: %s\n",qmess.toStdString().c_str());
  } else { // issue a dialog box
    UniqueMessageBox msgBox( QString("Warning"), qmess );
    msgBox.exec();
  }
  delete[] message;
}
#endif

/*! Issues a warning only once,
  by comparing it to a list of warnings issued previously. */
void MyWarning::unique_warning(const char *fmt, ...) {

  va_list ap;
  if (Quiet) return;
  char *message = new char[1000];

  va_start(ap, fmt);
  vsnprintf(message, 999, fmt, ap);		/* invoke interface to printf       */
  va_end(ap);

  static vector<string> previous_warnings;

  // search warning in list
  if (find(
	   previous_warnings.begin(),previous_warnings.end(), 
	   string(message)) 
      ==previous_warnings.end()) {

    // new warning, store in list
    previous_warnings.push_back(string(message));

    // issue warning
    warning("%s", message);

  } else {
    // don't issue warning
    return;
  }
}


#ifdef TESTBED

main(int argc, char * argv[])
{
  eprintf("warning: foo=%f\tbar=%d\tfum=\"%s\"\n", 3.1415, 32768, "waldo");
  error("error: foo=%f\tbar=%d\tfum=\"%s\"\n", 3.1415, 32768, "waldo");
}

#endif

/* finis */