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Location: EI/VirtualLeaf/src/TutorialCode/Tutorial0/tutorial0.cpp - annotation
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* Added functionality for numerical output (CSV) format. See functions starting with "CSV" in mesh.cpp. External code hull.cpp is responsible for convex hull calculations.
- ToDo: adopt menu item "File->export cell areas" so user can choose a file name or set up periodic output of numerical data.
- ToDo: add parameters re: periodic numeric output to "<settings>" block of LeafML-file, so it becomes possible to set up numeric output interactively, then write the LeafML file and run the program in batch mode to retrieve periodic numeric output.
* Added new functionality to plugin interface. It becomes possible to define a default LeafML init file for a plugin. It is read whenever the model plugin is loaded.
- ToDo: define default LeafML files for all plugins, according to the LeafML files mentioned in the Plant Phys. tutorial.
user: Roeland Merks <merks@cwi.nl>
branch 'default'
added src/hull.cpp
added src/hull.h
changed src/TutorialCode/Tutorial0/tutorial0.pro
changed src/VirtualLeaf.cpp
changed src/VirtualLeaf.pro
changed src/build_models/auxingrowthplugin.cpp
changed src/build_models/auxingrowthplugin.h
changed src/canvas.cpp
changed src/canvas.h
changed src/mainbase.h
changed src/mesh.cpp
changed src/mesh.h
changed src/modelcatalogue.cpp
changed src/simplugin.cpp
changed src/simplugin.h
changed src/xmlwrite.cpp
- ToDo: adopt menu item "File->export cell areas" so user can choose a file name or set up periodic output of numerical data.
- ToDo: add parameters re: periodic numeric output to "<settings>" block of LeafML-file, so it becomes possible to set up numeric output interactively, then write the LeafML file and run the program in batch mode to retrieve periodic numeric output.
* Added new functionality to plugin interface. It becomes possible to define a default LeafML init file for a plugin. It is read whenever the model plugin is loaded.
- ToDo: define default LeafML files for all plugins, according to the LeafML files mentioned in the Plant Phys. tutorial.
user: Roeland Merks <merks@cwi.nl>
branch 'default'
added src/hull.cpp
added src/hull.h
changed src/TutorialCode/Tutorial0/tutorial0.pro
changed src/VirtualLeaf.cpp
changed src/VirtualLeaf.pro
changed src/build_models/auxingrowthplugin.cpp
changed src/build_models/auxingrowthplugin.h
changed src/canvas.cpp
changed src/canvas.h
changed src/mainbase.h
changed src/mesh.cpp
changed src/mesh.h
changed src/modelcatalogue.cpp
changed src/simplugin.cpp
changed src/simplugin.h
changed src/xmlwrite.cpp
21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 21afbd2a2c01 | /*
*
* This file is part of the Virtual Leaf.
*
* The Virtual Leaf is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* The Virtual Leaf is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with the Virtual Leaf. If not, see <http://www.gnu.org/licenses/>.
*
* Copyright 2010 Roeland Merks.
*
*/
#include <QObject>
#include <QtGui>
#include "simplugin.h"
#include "parameter.h"
#include "wallbase.h"
#include "cellbase.h"
#include "tutorial0.h"
static const std::string _module_id("$Id$");
QString Tutorial0::ModelID(void) {
// specify the name of your model here
return QString( "My first model in VirtualLeaf" );
}
// return the number of chemicals your model uses
int Tutorial0::NChem(void) { return 0; }
// To be executed after cell division
void Tutorial0::OnDivide(ParentInfo *parent_info, CellBase *daughter1, CellBase *daughter2) {
// rules to be executed after cell division go here
// (e.g., cell differentiation rules)
}
void Tutorial0::SetCellColor(CellBase *c, QColor *color) {
// add cell coloring rules here
}
void Tutorial0::CellHouseKeeping(CellBase *c) {
// add cell behavioral rules here
}
void Tutorial0::CelltoCellTransport(Wall *w, double *dchem_c1, double *dchem_c2) {
// add biochemical transport rules here
}
void Tutorial0::WallDynamics(Wall *w, double *dw1, double *dw2) {
// add biochemical networks for reactions occuring at walls here
}
void Tutorial0::CellDynamics(CellBase *c, double *dchem) {
// add biochemical networks for intracellular reactions here
}
Q_EXPORT_PLUGIN2(tutorial0, Tutorial0)
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