Files @ 9a40ab737a73
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Location: EI/VirtualLeaf/src/TutorialCode/Tutorial0/tutorial0.cpp

Roeland Merks
* Added functionality for numerical output (CSV) format. See functions starting with "CSV" in mesh.cpp. External code hull.cpp is responsible for convex hull calculations.
- ToDo: adopt menu item "File->export cell areas" so user can choose a file name or set up periodic output of numerical data.
- ToDo: add parameters re: periodic numeric output to "<settings>" block of LeafML-file, so it becomes possible to set up numeric output interactively, then write the LeafML file and run the program in batch mode to retrieve periodic numeric output.

* Added new functionality to plugin interface. It becomes possible to define a default LeafML init file for a plugin. It is read whenever the model plugin is loaded.
- ToDo: define default LeafML files for all plugins, according to the LeafML files mentioned in the Plant Phys. tutorial.


user: Roeland Merks <merks@cwi.nl>
branch 'default'
added src/hull.cpp
added src/hull.h
changed src/TutorialCode/Tutorial0/tutorial0.pro
changed src/VirtualLeaf.cpp
changed src/VirtualLeaf.pro
changed src/build_models/auxingrowthplugin.cpp
changed src/build_models/auxingrowthplugin.h
changed src/canvas.cpp
changed src/canvas.h
changed src/mainbase.h
changed src/mesh.cpp
changed src/mesh.h
changed src/modelcatalogue.cpp
changed src/simplugin.cpp
changed src/simplugin.h
changed src/xmlwrite.cpp
/*
 *
 *  This file is part of the Virtual Leaf.
 *
 *  The Virtual Leaf is free software: you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation, either version 3 of the License, or
 *  (at your option) any later version.
 *
 *  The Virtual Leaf is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License
 *  along with the Virtual Leaf.  If not, see <http://www.gnu.org/licenses/>.
 *
 *  Copyright 2010 Roeland Merks.
 *
 */

#include <QObject>
#include <QtGui>

#include "simplugin.h"

#include "parameter.h"

#include "wallbase.h"
#include "cellbase.h"
#include "tutorial0.h"

static const std::string _module_id("$Id$");

QString Tutorial0::ModelID(void) {
  // specify the name of your model here
  return QString( "My first model in VirtualLeaf" );
}

// return the number of chemicals your model uses
int Tutorial0::NChem(void) { return 0; }

// To be executed after cell division
void Tutorial0::OnDivide(ParentInfo *parent_info, CellBase *daughter1, CellBase *daughter2) {
  // rules to be executed after cell division go here
  // (e.g., cell differentiation rules)
}

void Tutorial0::SetCellColor(CellBase *c, QColor *color) { 
  // add cell coloring rules here

}

void Tutorial0::CellHouseKeeping(CellBase *c) {
  // add cell behavioral rules here
}

void Tutorial0::CelltoCellTransport(Wall *w, double *dchem_c1, double *dchem_c2) {
  // add biochemical transport rules here
}
void Tutorial0::WallDynamics(Wall *w, double *dw1, double *dw2) {
  // add biochemical networks for reactions occuring at walls here
}
void Tutorial0::CellDynamics(CellBase *c, double *dchem) { 
  // add biochemical networks for intracellular reactions here
}


Q_EXPORT_PLUGIN2(tutorial0, Tutorial0)