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Location: EI/VirtualLeaf/data/leaves/tutorial2_init.xml - annotation
dcd49517f90b
7.6 KiB
application/xml
Two last corrections:
- Viewport was not written during automatic export of XML files, because Virtualization of XMLSettingsTree did not work due to inconsistent function definition (const vs. non-const)
- Some of the default parameter-file had "Start saving movie frames" switched on by default, dramatically slowing down the example runs. Now it is switched off in all example XML files.
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
changed data/leaves/auxin_growth.xml
changed data/leaves/tutorial5_init.xml
changed src/VirtualLeaf.cpp
changed src/mainbase.cpp
changed src/mainbase.h
- Viewport was not written during automatic export of XML files, because Virtualization of XMLSettingsTree did not work due to inconsistent function definition (const vs. non-const)
- Some of the default parameter-file had "Start saving movie frames" switched on by default, dramatically slowing down the example runs. Now it is switched off in all example XML files.
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
changed data/leaves/auxin_growth.xml
changed data/leaves/tutorial5_init.xml
changed src/VirtualLeaf.cpp
changed src/mainbase.cpp
changed src/mainbase.h
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<parameter>
<par name="arrowcolor" val="blue"/>
<par name="arrowsize" val="100"/>
<par name="textcolor" val="orange"/>
<par name="cellnumsize" val="1"/>
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<par name="outlinewidth" val="1"/>
<par name="cell_outline_color" val="forestgreen"/>
<par name="resize_stride" val="10"/>
<par name="export_interval" val="0"/>
<par name="export_fn_prefix" val="cell."/>
<par name="storage_stride" val="100"/>
<par name="xml_storage_stride" val="500"/>
<par name="datadir" val="tutorial2_data"/>
<par name="T" val="10"/>
<par name="lambda_length" val="100"/>
<par name="yielding_threshold" val="4"/>
<par name="lambda_celllength" val="0"/>
<par name="target_length" val="0"/>
<par name="cell_expansion_rate" val="5"/>
<par name="cell_div_expansion_rate" val="0"/>
<par name="auxin_dependent_growth" val="true"/>
<par name="ode_accuracy" val="0.0001"/>
<par name="mc_stepsize" val="1"/>
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<par name="energy_threshold" val="5"/>
<par name="bend_lambda" val="0"/>
<par name="alignment_lambda" val="0"/>
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<par name="collapse_node_threshold" val="0.05"/>
<par name="morphogen_div_threshold" val="0.2"/>
<par name="morphogen_expansion_threshold" val="0.01"/>
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<par name="km" val="1"/>
<par name="Pi_tot" val="1"/>
<par name="transport" val="0.036"/>
<par name="ka" val="1"/>
<par name="pin_prod" val="0.001"/>
<par name="pin_prod_in_epidermis" val="0.1"/>
<par name="pin_breakdown" val="0.001"/>
<par name="pin_breakdown_internal" val="0.001"/>
<par name="aux1prod" val="0.001"/>
<par name="aux1prodmeso" val="0"/>
<par name="aux1decay" val="0.001"/>
<par name="aux1decaymeso" val="0.1"/>
<par name="aux1transport" val="0.036"/>
<par name="aux_cons" val="0"/>
<par name="aux_breakdown" val="0"/>
<par name="kaux1" val="1"/>
<par name="kap" val="1"/>
<par name="leaf_tip_source" val="1"/>
<par name="sam_efflux" val="0.0001"/>
<par name="sam_auxin" val="10"/>
<par name="sam_auxin_breakdown" val="0"/>
<par name="van3prod" val="0.002"/>
<par name="van3autokat" val="0.1"/>
<par name="van3sat" val="10"/>
<par name="k2van3" val="0.3"/>
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<par name="movie" val="false"/>
<par name="nit" val="100000"/>
<par name="maxt" val="1000"/>
<par name="rseed" val="-1"/>
<par name="constituous_expansion_limit" val="16"/>
<par name="vessel_inh_level" val="1"/>
<par name="vessel_expansion_rate" val="0.25"/>
<par name="d" val="0.002"/>
<par name="e" val="0.1"/>
<par name="f" val="10"/>
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<par name="mu" val="0.12"/>
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<par name="c0" val="0.02"/>
<par name="gamma" val="0.02"/>
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<par name="b3" val="false"/>
<par name="b4" val="false"/>
<par name="dir1" val="."/>
<par name="dir2" val="."/>
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<setting name="show_border_cells" val="false"/>
<setting name="show_cell_axes" val="false"/>
<setting name="show_cell_strain" val="false"/>
<setting name="show_fluxes" val="false"/>
<setting name="show_walls" val="false"/>
<setting name="save_movie_frames" val="false"/>
<setting name="show_only_leaf_boundary" val="false"/>
<setting name="cell_growth" val="true"/>
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</leaf>
|