Files
@ b3943d0b8126
Branch filter:
Location: EI/VirtualLeaf/doc/v1.pdf
b3943d0b8126
22.1 KiB
application/pdf
Added a Q3FileDialog in canvas.cpp:Main::exportCellData() inquire
where to write the exportCellData.
--
user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'
added doc/Makefile
added doc/stylesheet.json
added doc/v1.html
added doc/v1.pdf
added doc/v1.rst
added src/leaficon.png
changed src/ChangeLog
changed src/canvas.cpp
where to write the exportCellData.
--
user: Michael Guravage <michael.guravage@cwi.nl>
branch 'default'
added doc/Makefile
added doc/stylesheet.json
added doc/v1.html
added doc/v1.pdf
added doc/v1.rst
added src/leaficon.png
changed src/ChangeLog
changed src/canvas.cpp
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957 958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975 976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005 1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019 1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033 1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047 1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061 1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075 1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089 1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103 1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114 1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128 1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142 1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156 1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170 1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184 1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198 1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212 1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226 1227 1228 1229 | %PDF-1.3
%“Œ‹ž ReportLab Generated PDF document http://www.reportlab.com
% 'BasicFonts': class PDFDictionary
1 0 obj
% The standard fonts dictionary
<< /F1 2 0 R
/F2 3 0 R
/F3 5 0 R >>
endobj
% 'F1': class PDFType1Font
2 0 obj
% Font Helvetica
<< /BaseFont /Helvetica
/Encoding /WinAnsiEncoding
/Name /F1
/Subtype /Type1
/Type /Font >>
endobj
% 'F2': class PDFType1Font
3 0 obj
% Font Helvetica-Bold
<< /BaseFont /Helvetica-Bold
/Encoding /WinAnsiEncoding
/Name /F2
/Subtype /Type1
/Type /Font >>
endobj
% 'Page1': class PDFPage
4 0 obj
% Page dictionary
<< /Contents 27 0 R
/MediaBox [ 0
0
595.2756
841.8898 ]
/Parent 26 0 R
/Resources << /Font 1 0 R
/ProcSet [ /PDF
/Text
/ImageB
/ImageC
/ImageI ] >>
/Rotate 0
/Trans << >>
/Type /Page >>
endobj
% 'F3': class PDFType1Font
5 0 obj
% Font Courier
<< /BaseFont /Courier
/Encoding /WinAnsiEncoding
/Name /F3
/Subtype /Type1
/Type /Font >>
endobj
% 'Page2': class PDFPage
6 0 obj
% Page dictionary
<< /Contents 28 0 R
/MediaBox [ 0
0
595.2756
841.8898 ]
/Parent 26 0 R
/Resources << /Font 1 0 R
/ProcSet [ /PDF
/Text
/ImageB
/ImageC
/ImageI ] >>
/Rotate 0
/Trans << >>
/Type /Page >>
endobj
% 'Page3': class PDFPage
7 0 obj
% Page dictionary
<< /Contents 29 0 R
/MediaBox [ 0
0
595.2756
841.8898 ]
/Parent 26 0 R
/Resources << /Font 1 0 R
/ProcSet [ /PDF
/Text
/ImageB
/ImageC
/ImageI ] >>
/Rotate 0
/Trans << >>
/Type /Page >>
endobj
% 'R8': class PDFCatalog
8 0 obj
% Document Root
<< /Outlines 10 0 R
/PageLabels 30 0 R
/PageMode /UseNone
/Pages 26 0 R
/Type /Catalog >>
endobj
% 'R9': class PDFInfo
9 0 obj
<< /Author ()
/CreationDate (D:20101005155533-01'00')
/Keywords ()
/Producer (ReportLab http://www.reportlab.com)
/Subject (\(unspecified\))
/Title (The Virtual Leaf) >>
endobj
% 'R10': class PDFOutlines
10 0 obj
<< /Count 16
/First 11 0 R
/Last 14 0 R
/Type /Outlines >>
endobj
% 'Outline.0': class OutlineEntryObject
11 0 obj
<< /Dest [ 4 0 R
/XYZ
62.69291
717.0236
0 ]
/Next 12 0 R
/Parent 10 0 R
/Title (Friday 11 June 2010) >>
endobj
% 'Outline.1': class OutlineEntryObject
12 0 obj
<< /Dest [ 4 0 R
/XYZ
62.69291
393.0236
0 ]
/Next 13 0 R
/Parent 10 0 R
/Prev 11 0 R
/Title (Friday 24 September 2010) >>
endobj
% 'Outline.2': class OutlineEntryObject
13 0 obj
<< /Dest [ 4 0 R
/XYZ
62.69291
273.0236
0 ]
/Next 14 0 R
/Parent 10 0 R
/Prev 12 0 R
/Title (Monday 27 September 2010) >>
endobj
% 'Outline.3': class OutlineEntryObject
14 0 obj
<< /Count 11
/Dest [ 4 0 R
/XYZ
62.69291
174.0236
0 ]
/First 15 0 R
/Last 25 0 R
/Parent 10 0 R
/Prev 13 0 R
/Title (Tuesday 5 October 20010) >>
endobj
% 'Outline.16.0': class OutlineEntryObject
15 0 obj
<< /Dest [ 4 0 R
/XYZ
62.69291
141.0236
0 ]
/Next 16 0 R
/Parent 14 0 R
/Title (tutorial0.pro) >>
endobj
% 'Outline.16.1': class OutlineEntryObject
16 0 obj
<< /Dest [ 6 0 R
/XYZ
62.69291
753.0236
0 ]
/Next 17 0 R
/Parent 14 0 R
/Prev 15 0 R
/Title (auxingrowthplugin.h) >>
endobj
% 'Outline.16.2': class OutlineEntryObject
17 0 obj
<< /Dest [ 6 0 R
/XYZ
62.69291
693.0236
0 ]
/Next 18 0 R
/Parent 14 0 R
/Prev 16 0 R
/Title (VirtualLeaf.cpp) >>
endobj
% 'Outline.16.3': class OutlineEntryObject
18 0 obj
<< /Dest [ 6 0 R
/XYZ
62.69291
633.0236
0 ]
/Next 19 0 R
/Parent 14 0 R
/Prev 17 0 R
/Title (canvas.h) >>
endobj
% 'Outline.16.4': class OutlineEntryObject
19 0 obj
<< /Dest [ 6 0 R
/XYZ
62.69291
585.0236
0 ]
/Next 20 0 R
/Parent 14 0 R
/Prev 18 0 R
/Title (canvas.cpp) >>
endobj
% 'Outline.16.5': class OutlineEntryObject
20 0 obj
<< /Dest [ 6 0 R
/XYZ
62.69291
395.8236
0 ]
/Next 21 0 R
/Parent 14 0 R
/Prev 19 0 R
/Title (mesh.h) >>
endobj
% 'Outline.16.6': class OutlineEntryObject
21 0 obj
<< /Dest [ 6 0 R
/XYZ
62.69291
250.4814
0 ]
/Next 22 0 R
/Parent 14 0 R
/Prev 20 0 R
/Title (mesh.cpp) >>
endobj
% 'Outline.16.7': class OutlineEntryObject
22 0 obj
<< /Dest [ 7 0 R
/XYZ
62.69291
753.0236
0 ]
/Next 23 0 R
/Parent 14 0 R
/Prev 21 0 R
/Title (modelcatalogue.cpp) >>
endobj
% 'Outline.16.8': class OutlineEntryObject
23 0 obj
<< /Dest [ 7 0 R
/XYZ
62.69291
705.0236
0 ]
/Next 24 0 R
/Parent 14 0 R
/Prev 22 0 R
/Title (simplugin.h) >>
endobj
% 'Outline.16.9': class OutlineEntryObject
24 0 obj
<< /Dest [ 7 0 R
/XYZ
62.69291
611.8236
0 ]
/Next 25 0 R
/Parent 14 0 R
/Prev 23 0 R
/Title (simplugin.cpp) >>
endobj
% 'Outline.16.10': class OutlineEntryObject
25 0 obj
<< /Dest [ 7 0 R
/XYZ
62.69291
530.6236
0 ]
/Parent 14 0 R
/Prev 24 0 R
/Title (xmlwrite.cpp) >>
endobj
% 'R26': class PDFPages
26 0 obj
% page tree
<< /Count 3
/Kids [ 4 0 R
6 0 R
7 0 R ]
/Type /Pages >>
endobj
% 'R27': class PDFStream
27 0 obj
% page stream
<< /Length 8892 >>
stream
1 0 0 1 0 0 cm BT /F1 12 Tf 14.4 TL ET
q
1 0 0 1 62.69291 729.0236 cm
q
0 0 0 rg
BT 1 0 0 1 0 9.64 Tm /F2 20 Tf 24 TL (The Virtual Leaf) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 696.0236 cm
q
BT 1 0 0 1 0 8.435 Tm 21 TL /F2 17.5 Tf 0 0 0 rg (Friday 11 June 2010) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 678.0236 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL (Issues:) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 672.0236 cm
Q
q
1 0 0 1 62.69291 405.0236 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
BT 1 0 0 1 0 2 Tm T* ET
q
1 0 0 1 20 267 cm
Q
q
1 0 0 1 20 267 cm
Q
q
1 0 0 1 20 225 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 6 27 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 5.66 0 Td (1.) Tj T* -5.66 0 Td ET
Q
Q
q
1 0 0 1 23 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 28.82 Tm /F1 10 Tf 12 TL 1.55284 Tw (Every class that has an association or composition eventually will need its own custom view) Tj T* 0 Tw .83436 Tw (page template, e.g. sed_view. For the moment I have set the default view for these classes to) Tj T* 0 Tw (dev_view \( a copy of base_view \).) Tj T* ET
Q
Q
q
Q
Q
q
1 0 0 1 20 225 cm
Q
q
1 0 0 1 20 228 cm
Q
q
1 0 0 1 20 198 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 6 15 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 5.66 0 Td (2.) Tj T* -5.66 0 Td ET
Q
Q
q
1 0 0 1 23 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 16.82 Tm /F1 10 Tf 12 TL 1.744651 Tw (An association in UML is cast as a ReferenceField in the resulting class schema. Open the) Tj T* 0 Tw (association and add the widget:label tag to the class that is being associated.) Tj T* ET
Q
Q
q
Q
Q
q
1 0 0 1 20 198 cm
Q
q
1 0 0 1 20 201 cm
Q
q
1 0 0 1 20 171 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 6 15 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 5.66 0 Td (3.) Tj T* -5.66 0 Td ET
Q
Q
q
1 0 0 1 23 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 16.82 Tm /F1 10 Tf 12 TL .73061 Tw (The default description text for a class should be a informative description of the class, not the) Tj T* 0 Tw (instance, derived from the SED-ML manual.) Tj T* ET
Q
Q
q
Q
Q
q
1 0 0 1 20 171 cm
Q
q
1 0 0 1 20 174 cm
Q
q
1 0 0 1 20 156 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 6 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 5.66 0 Td (4.) Tj T* -5.66 0 Td ET
Q
Q
q
1 0 0 1 23 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL (Apply 'searchable' tags to the appropriate class attributes.) Tj T* ET
Q
Q
q
Q
Q
q
1 0 0 1 20 156 cm
Q
q
1 0 0 1 20 159 cm
Q
q
1 0 0 1 20 141 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 6 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 5.66 0 Td (5.) Tj T* -5.66 0 Td ET
Q
Q
q
1 0 0 1 23 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL (I choose 'isTidyHtmlWithCleanup' as the MathML validator. Will this work?) Tj T* ET
Q
Q
q
Q
Q
q
1 0 0 1 20 141 cm
Q
q
1 0 0 1 20 144 cm
Q
q
1 0 0 1 20 0 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 6 129 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 5.66 0 Td (6.) Tj T* -5.66 0 Td ET
Q
Q
q
1 0 0 1 23 117 cm
q
0 0 0 rg
BT 1 0 0 1 0 16.82 Tm /F1 10 Tf 12 TL .76811 Tw (What should be added to our implementation of SED-ML to make it more than merely a mirror) Tj T* 0 Tw (image of the SED-ML XML format?) Tj T* ET
Q
Q
q
1 0 0 1 23 111 cm
Q
q
1 0 0 1 23 3 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
BT 1 0 0 1 0 2 Tm T* ET
q
1 0 0 1 20 108 cm
Q
q
1 0 0 1 20 108 cm
Q
q
1 0 0 1 20 90 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 6 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 5.66 0 Td (a.) Tj T* -5.66 0 Td ET
Q
Q
q
1 0 0 1 23 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL (The ability to attach files at various points, e.g. parameter files.) Tj T* ET
Q
Q
q
Q
Q
q
1 0 0 1 20 90 cm
Q
q
1 0 0 1 20 93 cm
Q
q
1 0 0 1 20 75 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 6 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 5.66 0 Td (b.) Tj T* -5.66 0 Td ET
Q
Q
q
1 0 0 1 23 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL (Additional output types, e.g. animations.) Tj T* ET
Q
Q
q
Q
Q
q
1 0 0 1 20 75 cm
Q
q
1 0 0 1 20 78 cm
Q
q
1 0 0 1 20 60 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 6 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 6.22 0 Td (c.) Tj T* -6.22 0 Td ET
Q
Q
q
1 0 0 1 23 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL (Custom page templates) Tj T* ET
Q
Q
q
Q
Q
q
1 0 0 1 20 60 cm
Q
q
1 0 0 1 20 63 cm
Q
q
1 0 0 1 20 45 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 6 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 5.66 0 Td (d.) Tj T* -5.66 0 Td ET
Q
Q
q
1 0 0 1 23 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL (Custom search form) Tj T* ET
Q
Q
q
Q
Q
q
1 0 0 1 20 45 cm
Q
q
1 0 0 1 20 48 cm
Q
q
1 0 0 1 20 30 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 6 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 5.66 0 Td (e.) Tj T* -5.66 0 Td ET
Q
Q
q
1 0 0 1 23 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL (Custom catalog indexes) Tj T* ET
Q
Q
q
Q
Q
q
1 0 0 1 20 30 cm
Q
q
1 0 0 1 20 33 cm
Q
q
1 0 0 1 20 15 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 6 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 8.44 0 Td (f.) Tj T* -8.44 0 Td ET
Q
Q
q
1 0 0 1 23 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL (Custom portlet\(s\)) Tj T* ET
Q
Q
q
Q
Q
q
1 0 0 1 20 15 cm
Q
q
1 0 0 1 20 18 cm
Q
q
1 0 0 1 20 0 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 6 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 5.66 0 Td (g.) Tj T* -5.66 0 Td ET
Q
Q
q
1 0 0 1 23 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL (Custom viewlet\(s\)) Tj T* ET
Q
Q
q
Q
Q
q
1 0 0 1 20 0 cm
Q
q
1 0 0 1 20 0 cm
Q
q
Q
Q
q
1 0 0 1 23 3 cm
Q
q
Q
Q
q
1 0 0 1 20 0 cm
Q
q
1 0 0 1 20 0 cm
Q
q
Q
Q
q
1 0 0 1 62.69291 405.0236 cm
Q
q
1 0 0 1 62.69291 372.0236 cm
q
BT 1 0 0 1 0 8.435 Tm 21 TL /F2 17.5 Tf 0 0 0 rg (Friday 24 September 2010) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 315.0236 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 0 36 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F2 10 Tf 12 TL (To Do:) Tj T* ET
Q
Q
BT 1 0 0 1 0 23 Tm T* ET
q
1 0 0 1 10 33 cm
Q
q
1 0 0 1 10 33 cm
Q
q
1 0 0 1 10 15 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 6 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 5.66 0 Td (1.) Tj T* -5.66 0 Td ET
Q
Q
q
1 0 0 1 23 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL (Publish our mercurial repositories \(Chris/Martin\). This may mesh with deploying Plone.) Tj T* ET
Q
Q
q
Q
Q
q
1 0 0 1 10 15 cm
Q
q
1 0 0 1 10 18 cm
Q
q
1 0 0 1 10 0 cm
0 0 0 rg
BT /F1 10 Tf 12 TL ET
q
1 0 0 1 6 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 5.66 0 Td (2.) Tj T* -5.66 0 Td ET
Q
Q
q
1 0 0 1 23 3 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL (Create a vleaf mailing list \(Henk\).) Tj T* ET
Q
Q
q
Q
Q
q
1 0 0 1 10 0 cm
Q
q
1 0 0 1 10 0 cm
Q
q
Q
Q
q
1 0 0 1 62.69291 285.0236 cm
q
0 0 0 rg
BT 1 0 0 1 0 16.82 Tm /F1 10 Tf 12 TL .602927 Tw (Found an article on SBRML - a markup language for associating systems biology data with models. At a) Tj T* 0 Tw (glance the schema seems bigger than SED-ML's, but SBRML appears to be SBML specific.) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 252.0236 cm
q
BT 1 0 0 1 0 8.435 Tm 21 TL /F2 17.5 Tf 0 0 0 rg (Monday 27 September 2010) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 186.0236 cm
q
0 0 0 rg
BT 1 0 0 1 0 52.82 Tm /F1 10 Tf 12 TL 3.993828 Tw (Spoke with Chris about publishing the Mercurial repositories and deploying Plone. Both can be) Tj T* 0 Tw .131567 Tw (accomplished in their own project space on a server in the DMZ. Chris said he would supply me with login) Tj T* 0 Tw 3.871984 Tw (credentials for both accounts. I will install Plone and Chris \(or Maarten\) will help me configure) Tj T* 0 Tw .795318 Tw (Apache/nginx and Varnish. Chris will install the required Mercurial packages; after which I can clone the) Tj T* 0 Tw (repositories to their new home.) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 153.0236 cm
q
BT 1 0 0 1 0 8.435 Tm 21 TL /F2 17.5 Tf 0 0 0 rg (Tuesday 5 October 20010) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 123.0236 cm
q
BT 1 0 0 1 0 7.23 Tm 18 TL /F2 15 Tf 0 0 0 rg (tutorial0.pro) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 105.0236 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL (Added simplugin.h to list of header files. NB: this is the only tutorial in which simplugin.h appears.) Tj T* ET
Q
Q
q
1 0 0 1 56.69291 773.1969 cm
q
BT 1 0 0 1 0 4.82 Tm 205.6499 0 Td 12 TL /F1 10 Tf 0 0 0 rg (The Virtual Leaf) Tj T* -205.6499 0 Td ET
Q
Q
q
1 0 0 1 56.69291 56.69291 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 238.1649 0 Td (1) Tj T* -238.1649 0 Td ET
Q
Q
endstream
endobj
% 'R28': class PDFStream
28 0 obj
% page stream
<< /Length 4804 >>
stream
1 0 0 1 0 0 cm BT /F1 12 Tf 14.4 TL ET
q
1 0 0 1 62.69291 735.0236 cm
q
BT 1 0 0 1 0 7.23 Tm 18 TL /F2 15 Tf 0 0 0 rg (auxingrowthplugin.h) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 705.0236 cm
q
BT 1 0 0 1 0 16.82 Tm 2.02498 Tw 12 TL /F1 10 Tf 0 0 0 rg (Declared, and defined, a virtual function named ) Tj /F3 10 Tf (DefaultLeafML\(\) ) Tj /F1 10 Tf (which merely returns a QString) Tj T* 0 Tw (naming a LeafML filename sans path.) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 675.0236 cm
q
BT 1 0 0 1 0 7.23 Tm 18 TL /F2 15 Tf 0 0 0 rg (VirtualLeaf.cpp) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 645.0236 cm
q
BT 1 0 0 1 0 16.82 Tm 14.41996 Tw 12 TL /F1 10 Tf 0 0 0 rg (Moved ) Tj /F3 10 Tf (Cell::SetMagnification\(\) ) Tj /F1 10 Tf (and ) Tj /F3 10 Tf (Cell::SetOffset\(\) ) Tj /F1 10 Tf (from ) Tj /F3 10 Tf (main\(\) ) Tj /F1 10 Tf (to) Tj T* 0 Tw /F3 10 Tf (MainBase::Init\(\)) Tj /F1 10 Tf (.) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 615.0236 cm
q
BT 1 0 0 1 0 7.23 Tm 18 TL /F2 15 Tf 0 0 0 rg (canvas.h) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 597.0236 cm
q
BT 1 0 0 1 0 4.82 Tm 12 TL /F1 10 Tf 0 0 0 rg (Declare ) Tj /F3 10 Tf (exportCellData\(\)) Tj /F1 10 Tf (.) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 567.0236 cm
q
BT 1 0 0 1 0 7.23 Tm 18 TL /F2 15 Tf 0 0 0 rg (canvas.cpp) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 537.0236 cm
q
BT 1 0 0 1 0 16.82 Tm 8.836412 Tw 12 TL /F1 10 Tf 0 0 0 rg (Add an 'Export cell areas' to the file dropdown menu which invokes - surprise -) Tj T* 0 Tw /F3 10 Tf (Main::exportCellData\(\)) Tj /F1 10 Tf (:) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 407.8236 cm
q
q
1 0 0 1 0 0 cm
q
1 0 0 1 6.6 6.6 cm
q
.662745 .662745 .662745 RG
.5 w
.960784 .960784 .862745 rg
n -6 -6 468.6898 120 re B*
Q
q
BT 1 0 0 1 0 101.71 Tm 12 TL /F3 10 Tf 0 0 0 rg (void Main::exportCellData\(void\) {) Tj T* ( QFile file\("areas.csv"\);) Tj T* ( if \( file.open\( IO_WriteOnly \) \) {) Tj T* ( QTextStream stream\( ) Tj (&) Tj (file \);) Tj T* ( mesh.CSVExportCellData\(stream\);) Tj T* ( mesh.CSVExportMeshData\(stream\);) Tj T* ( file.close\(\);) Tj T* ( }) Tj T* (}) Tj T* ET
Q
Q
Q
Q
Q
q
1 0 0 1 62.69291 377.8236 cm
q
BT 1 0 0 1 0 7.23 Tm 18 TL /F2 15 Tf 0 0 0 rg (mesh.h) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 359.8236 cm
q
BT 1 0 0 1 0 4.82 Tm 12 TL /F1 10 Tf 0 0 0 rg (Include ) Tj /F3 10 Tf (<) Tj (QTextStream) Tj (>) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 329.8236 cm
q
0 0 0 rg
BT 1 0 0 1 0 16.82 Tm /F1 10 Tf 12 TL .752765 Tw (Set the boundary_poloygon pointer to zero in the class constructor, and delete it, if it exists, in the class) Tj T* 0 Tw (destructor.) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 311.8236 cm
q
BT 1 0 0 1 0 4.82 Tm 12 TL /F1 10 Tf 0 0 0 rg (Declare ) Tj /F3 10 Tf (Compactness\(\)) Tj /F1 10 Tf (, ) Tj /F3 10 Tf (CSVExportCellData\(\) ) Tj /F1 10 Tf (and ) Tj /F3 10 Tf (CSVExportMeshData\(\)) Tj /F1 10 Tf (:) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 262.4814 cm
q
q
.840289 0 0 .840289 0 0 cm
q
1 0 0 1 6.6 7.854438 cm
q
.662745 .662745 .662745 RG
.5 w
.960784 .960784 .862745 rg
n -6 -6 558 48 re B*
Q
q
BT 1 0 0 1 0 29.71 Tm 12 TL /F3 10 Tf 0 0 0 rg (double Compactness\(double *res_compactness=0, double *res_area=0, double *res_cell_area=0\);) Tj T* (void CSVExportCellData\(QTextStream ) Tj (&) Tj (csv_stream\) const;) Tj T* (void CSVExportMeshData\(QTextStream ) Tj (&) Tj (csv_stream\);) Tj T* ET
Q
Q
Q
Q
Q
q
1 0 0 1 62.69291 232.4814 cm
q
BT 1 0 0 1 0 7.23 Tm 18 TL /F2 15 Tf 0 0 0 rg (mesh.cpp) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 214.4814 cm
q
BT 1 0 0 1 0 4.82 Tm 12 TL /F1 10 Tf 0 0 0 rg (In ) Tj /F3 10 Tf (mesh::clear\(\)) Tj /F1 10 Tf (, delete the boundary_polygon only if the pointer hasn't been assigned:) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 145.2814 cm
q
q
1 0 0 1 0 0 cm
q
1 0 0 1 6.6 6.6 cm
q
.662745 .662745 .662745 RG
.5 w
.960784 .960784 .862745 rg
n -6 -6 468.6898 60 re B*
Q
q
0 0 0 rg
BT 1 0 0 1 0 41.71 Tm /F3 10 Tf 12 TL (if \(boundary_polygon\) {) Tj T* ( delete boundary_polygon;) Tj T* ( boundary_polygon=0;) Tj T* ( }) Tj T* ET
Q
Q
Q
Q
Q
q
1 0 0 1 62.69291 125.2814 cm
q
BT 1 0 0 1 0 4.82 Tm 12 TL /F1 10 Tf 0 0 0 rg (Ditto for ) Tj /F3 10 Tf (mesh::clean\(\)) Tj /F1 10 Tf (.) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 107.2814 cm
q
BT 1 0 0 1 0 4.82 Tm 12 TL /F1 10 Tf 0 0 0 rg (Define the code for ) Tj /F3 10 Tf (Compactness\(\)) Tj /F1 10 Tf (, ) Tj /F3 10 Tf (CSVExportCellData\(\) ) Tj /F1 10 Tf (and ) Tj /F3 10 Tf (CSVExportMeshData\(\)) Tj /F1 10 Tf (.) Tj T* ET
Q
Q
q
1 0 0 1 56.69291 773.1969 cm
q
BT 1 0 0 1 0 4.82 Tm 205.6499 0 Td 12 TL /F1 10 Tf 0 0 0 rg (The Virtual Leaf) Tj T* -205.6499 0 Td ET
Q
Q
q
1 0 0 1 56.69291 56.69291 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 238.1649 0 Td (2) Tj T* -238.1649 0 Td ET
Q
Q
endstream
endobj
% 'R29': class PDFStream
29 0 obj
% page stream
<< /Length 2249 >>
stream
1 0 0 1 0 0 cm BT /F1 12 Tf 14.4 TL ET
q
1 0 0 1 62.69291 735.0236 cm
q
BT 1 0 0 1 0 7.23 Tm 18 TL /F2 15 Tf 0 0 0 rg (modelcatalogue.cpp) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 717.0236 cm
q
BT 1 0 0 1 0 4.82 Tm 12 TL /F1 10 Tf 0 0 0 rg (In ) Tj /F3 10 Tf (InstallModel\(\)) Tj /F1 10 Tf (, find and load the default LeafML file.) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 687.0236 cm
q
BT 1 0 0 1 0 7.23 Tm 18 TL /F2 15 Tf 0 0 0 rg (simplugin.h) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 669.0236 cm
q
BT 1 0 0 1 0 4.82 Tm 12 TL /F1 10 Tf 0 0 0 rg (Declare ) Tj /F3 10 Tf (DefaultLeafML\(\)) Tj /F1 10 Tf (:) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 623.8236 cm
q
q
1 0 0 1 0 0 cm
q
1 0 0 1 6.6 6.6 cm
q
.662745 .662745 .662745 RG
.5 w
.960784 .960784 .862745 rg
n -6 -6 468.6898 36 re B*
Q
q
0 0 0 rg
BT 1 0 0 1 0 17.71 Tm /F3 10 Tf 12 TL (// Default LeafML-file to be read after model startup) Tj T* (virtual QString DefaultLeafML\(void\);) Tj T* ET
Q
Q
Q
Q
Q
q
1 0 0 1 62.69291 593.8236 cm
q
BT 1 0 0 1 0 7.23 Tm 18 TL /F2 15 Tf 0 0 0 rg (simplugin.cpp) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 575.8236 cm
q
BT 1 0 0 1 0 4.82 Tm 12 TL /F1 10 Tf 0 0 0 rg (Define ) Tj /F3 10 Tf (DefaultLeafML\(\)) Tj /F1 10 Tf (. Returns an empty ) Tj /F3 10 Tf (QString) Tj /F1 10 Tf (:) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 542.6236 cm
q
q
1 0 0 1 0 0 cm
q
1 0 0 1 6.6 6.6 cm
q
.662745 .662745 .662745 RG
.5 w
.960784 .960784 .862745 rg
n -6 -6 468.6898 24 re B*
Q
q
0 0 0 rg
BT 1 0 0 1 0 5.71 Tm /F3 10 Tf 12 TL (QString SimPluginInterface::DefaultLeafML\(void\) { return QString\(\); }) Tj T* ET
Q
Q
Q
Q
Q
q
1 0 0 1 62.69291 512.6236 cm
q
BT 1 0 0 1 0 7.23 Tm 18 TL /F2 15 Tf 0 0 0 rg (xmlwrite.cpp) Tj T* ET
Q
Q
q
1 0 0 1 62.69291 494.6236 cm
q
BT 1 0 0 1 0 4.82 Tm 12 TL /F1 10 Tf 0 0 0 rg (In ) Tj /F3 10 Tf (Mesh::XMLReadCells\(\) ) Tj /F1 10 Tf (- Delete the boundary_ploygon only if its pointer has been assigned.) Tj T* ET
Q
Q
q
1 0 0 1 56.69291 773.1969 cm
q
BT 1 0 0 1 0 4.82 Tm 205.6499 0 Td 12 TL /F1 10 Tf 0 0 0 rg (The Virtual Leaf) Tj T* -205.6499 0 Td ET
Q
Q
q
1 0 0 1 56.69291 56.69291 cm
q
0 0 0 rg
BT 1 0 0 1 0 4.82 Tm /F1 10 Tf 12 TL 238.1649 0 Td (3) Tj T* -238.1649 0 Td ET
Q
Q
endstream
endobj
% 'R30': class PDFPageLabels
30 0 obj
% Document Root
<< /Nums [ 0
31 0 R
1
32 0 R
2
33 0 R ] >>
endobj
% 'R31': class PDFPageLabel
31 0 obj
% None
<< /S /D
/St 1 >>
endobj
% 'R32': class PDFPageLabel
32 0 obj
% None
<< /S /D
/St 2 >>
endobj
% 'R33': class PDFPageLabel
33 0 obj
% None
<< /S /D
/St 3 >>
endobj
xref
0 34
0000000000 65535 f
0000000113 00000 n
0000000233 00000 n
0000000398 00000 n
0000000571 00000 n
0000000852 00000 n
0000001011 00000 n
0000001290 00000 n
0000001569 00000 n
0000001726 00000 n
0000001953 00000 n
0000002079 00000 n
0000002258 00000 n
0000002457 00000 n
0000002656 00000 n
0000002885 00000 n
0000003061 00000 n
0000003258 00000 n
0000003451 00000 n
0000003637 00000 n
0000003825 00000 n
0000004009 00000 n
0000004195 00000 n
0000004391 00000 n
0000004580 00000 n
0000004772 00000 n
0000004928 00000 n
0000005051 00000 n
0000014044 00000 n
0000018949 00000 n
0000021303 00000 n
0000021422 00000 n
0000021499 00000 n
0000021576 00000 n
trailer
<< /ID
% ReportLab generated PDF document -- digest (http://www.reportlab.com)
[(\024,\377\262\237\332\204L\232\207%\364ho\271\264) (\024,\377\262\237\332\204L\232\207%\364ho\271\264)]
/Info 9 0 R
/Root 8 0 R
/Size 34 >>
startxref
21623
%%EOF
|