Files @ c6ad8e34e8eb
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Location: EI/VirtualLeaf/src/VirtualLeaf.pro

Roeland Merks
In response to referee's comment:

"I am also afraid that

the ‘snapshot’ and the ‘Export cell data’ functions do not seem to work very
well in my hands, could the program be changed so that the correct file
extension (.jpg, .tif, .txt, .dat, .xls, .csv…) is given automatically."

I corrected the "export cell data" dialog (it did not actually write the file in the submitted version). Also we now assume default file extensions (.jpg for snapshot and .csv for data export) if none is given.

--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
changed src/VirtualLeaf.pro
changed src/canvas.cpp
removed src/miscq.cpp
removed src/miscq.h
#
#  $Id$
#
#  This file is part of the Virtual Leaf.
#
#  The Virtual Leaf is free software: you can redistribute it and/or modify
#  it under the terms of the GNU General Public License as published by
#  the Free Software Foundation, either version 3 of the License, or
#  (at your option) any later version.
#
#  The Virtual Leaf is distributed in the hope that it will be useful,
#  but WITHOUT ANY WARRANTY; without even the implied warranty of
#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#  GNU General Public License for more details.
#
#  You should have received a copy of the GNU General Public License
#  along with the Virtual Leaf.  If not, see <http://www.gnu.org/licenses/>.
#
#  Copyright 2010 Roeland Merks.
#

CONFIG += release
CONFIG -= debug
CONFIG += qt

QMAKE_CXXFLAGS += -fexceptions
QMAKE_CXXFLAGS += -Wall
QMAKE_CXXFLAGS += -Wno-write-strings
QMAKE_CXXFLAGS += -Wno-unused-parameter
QMAKE_CXXFLAGS_DEBUG += -g3
QMAKE_CXXFLAGS_DEBUG += -DQDEBUG

#REACTIONS = reactions_auxin_growth.h 
#REACTIONS = reactions_meinhardt.h
#REACTIONS = reactions_pce_growth.h
DEFINES += QTGRAPHICS
DEFINES += REACTIONS_HEADER=$${REACTIONS}
DEFINES += REACTIONS_HEADER_STRING=\"$${REACTIONS}\"
DEFINES += FLEMING

BINDIR = ../bin
LIBDIR = ../lib
DESTDIR = $$BINDIR
TARGET = VirtualLeaf
TEMPLATE = app
PARTMPL = $${TARGET}par.tmpl
MAINSRC = $${TARGET}.cpp
QT -= network sql xml
QT += qt3support

!win32 {
 GRAPHICS = qt #qwt
}

win32 {
 CONFIG -= console
 LIBXML2DIR = $${LIBDIR}\libxml2
 LIBICONVDIR = $${LIBDIR}\libiconv
 LIBZDIR = $${LIBDIR}\libz
 GRAPHICS = qt 
 RC_FILE = VirtualLeaf.rc
 QMAKE_CXXFLAGS += -DLIBXML_STATIC
 QMAKE_CXXFLAGS += -I$${LIBXML2DIR}\include -I$${LIBICONVDIR}\include -I$${LIBZDIR}\include
 LIBS += -L$${LIBXML2DIR}\lib -lxml2 -L$${LIBICONVDIR}\lib -L$${LIBZDIR}\lib  -lz -lm -lwsock32 -liconv
}


macx:release {
 LIBS+= -dead_strip
}

unix {
 CC = /usr/bin/gcc 
 QWTDIR = /ufs/guravage/opt/qwt-5.2.1-svn
 QMAKE_LIBDIR += $$QWTDIR/lib 
 QMAKE_CXXFLAGS += -fPIC -I/usr/include/libxml2
 QMAKE_LFLAGS += -fPIC
 LIBS += -lxml2 -lz -lm 
}

# Input
HEADERS += \
# apoplastitem.h \
 canvas.h \
 cellbase.h \
 cell.h \
 cellitem.h \
 forwardeuler.h \
       hull.h \ 
 infobar.h \
 mainbase.h \
 mainbase.h \
 matrix.h \
 mesh.h \
 modelcatalogue.h \
 Neighbor.h \
 node.h \
 nodeitem.h \
 nodeset.h \
 OptionFileDialog.h \
 output.h \
 parameter.h \
 pardialog.h \
 parse.h \
 pi.h \
 qcanvasarrow.h \
 random.h \
 rungekutta.h \
 simitembase.h \
 simplugin.h \
 sqr.h \
 tiny.h \
 transporterdialog.h \
 UniqueMessage.h \
 vector.h \
 wallbase.h \
 wall.h \
 wallitem.h \
 warning.h \
 xmlwrite.h \
 $${PARTMPL}

SOURCES += \
# apoplastitem.cpp \
 canvas.cpp \
 cellbase.cpp \
 cell.cpp \
 cellitem.cpp \
 forwardeuler.cpp \
 hull.cpp \
 mainbase.cpp \
 matrix.cpp \
 mesh.cpp \
 modelcatalogue.cpp \
 Neighbor.cpp \
 node.cpp \
 nodeitem.cpp \
 nodeset.cpp \
 OptionFileDialog.cpp \
 output.cpp \
 parameter.cpp \
 pardialog.cpp \
 parse.cpp \
 random.cpp \
 rungekutta.cpp \
 simitembase.cpp \
 transporterdialog.cpp \
 UniqueMessage.cpp \
 vector.cpp \
 wallbase.cpp \
 wall.cpp \
 wallitem.cpp \
 warning.cpp \
 xmlwrite.cpp \
 $$MAINSRC

contains( TARGET, leaf_fleming ) {
 DEFINES += FLEMING	
}

contains(GRAPHICS, qwt) {
 #macx:LIBS += -L$$QWTDIR/lib -lqwt
 #win32:LIBS += -L$$QWTDIR/lib -lqwt5
 #LIBS += -L$$QWTDIR/lib -lqwt
 INCLUDEPATH += $$QWTDIR/include
 DEFINES += HAVE_QWT
 HEADERS += data_plot.h
 SOURCES += data_plot.cpp
}

contains( GRAPHICS, qt ) {
 message( "Building Qt executable" )
 QMAKE_CXXFLAGS += -DQTGRAPHICS # -fpermissive
}

contains( GRAPHICS, xfig ) {
 message("Building Xfig executable (background runnable).")
 QMAKE_CXXFLAGS += -DXFIGGRAPHICS
}

contains( GRAPHICS, x11 ) {
 !unix {
  error("X11 graphics only available on Unix systems.")
 }
 message("Building X11 executable")
 SOURCES += x11graph.cpp
 HEADERS += x11graph.h
 QMAKE_CXXFLAGS += -DX11GRAPHICS
 CONFIG -= qt
 CONFIG += x11
 unix:LIBS += -lpng
}

#contains( GRAPHICS, qwt ) {
# 	QMAKE_POST_LINK = "install_name_tool -change libqwt.5.dylib $$QWTDIR/lib/libqwt.dylib $${TARGET}.app/Contents/MacOS/$${TARGET}; \
#}

# MACOSX packaging
macx {
ICON = leaficon.icns
QMAKE_POST_LINK = "\
	#install_name_tool -change libqwt.5.dylib $$QWTDIR/lib/libqwt.dylib $${TARGET}.app/Contents/MacOS/$${TARGET}; \
	cp leaficon.icns $${DESTDIR}/$${TARGET}.app; \
	cp ../doc/gpl3.txt $${DESTDIR}/$${TARGET}.app/Contents/MacOS/.                                    ; \
	mkdir $${DESTDIR}/$${TARGET}.app/Contents/Frameworks; \
	cp -R /Library/Frameworks/QtCore.framework $${DESTDIR}/$${TARGET}.app/Contents/Frameworks; \
	cp -R /Library/Frameworks/QtGui.framework $${DESTDIR}/$${TARGET}.app/Contents/Frameworks; \
	cp -R /Library/Frameworks/Qt3Support.framework $${DESTDIR}/$${TARGET}.app/Contents/Frameworks; \
	#cp /usr/local/qwt/lib/libqwt.dylib $${DESTDIR}/$${TARGET}.app/Contents/Frameworks; \
	#install_name_tool -id @executable_path/../Frameworks/libqwt.dylib $${DESTDIR}/$${TARGET}.app/Contents/Frameworks/libqwt.dylib; \
	install_name_tool -change /usr/local/qwt/lib/libqwt.dylib @executable_path/../Frameworks/libqwt.dylib $${DESTDIR}/$${TARGET}.app/Contents/MacOS/$${TARGET};\
	install_name_tool -id @executable_path/../Frameworks/QtCore.framework/Versions/Current/QtCore $${DESTDIR}/$${TARGET}.app/Contents/Frameworks/QtCore.framework/Versions/4.0/QtCore; \
	install_name_tool -id @executable_path/../Frameworks/QtGui.framework/Versions/Current/QtGui $${DESTDIR}/$${TARGET}.app/Contents/Frameworks/QtGui.framework/Versions/4.0/QtGui; \
	install_name_tool -id @executable_path/../Frameworks/Qt3Support.framework/Versions/Current/Qt3Support $${DESTDIR}/$${TARGET}.app/Contents/Frameworks/Qt3Support.framework/Versions/4.0/Qt3Support; \
	install_name_tool -change Frameworks/QtCore.framework/Versions/Current/QtCore @executable_path/../Frameworks/QtCore.framework/Versions/4.0/QtCore $${DESTDIR}/$${TARGET}.app/Contents/MacOS/$${TARGET}; \
	install_name_tool -change Frameworks/QtGui.framework/Versions/Current/QtGui @executable_path/../Frameworks/QtGui.framework/Versions/4.0/QtGui $${DESTDIR}/$${TARGET}.app/Contents/MacOS/$${TARGET}; \
	install_name_tool -change Frameworks/Qt3Support.framework/Versions/Current/Qt3Support @executable_path/../Frameworks/Qt3Support.framework/Versions/4.0/Qt3Support $${DESTDIR}/$${TARGET}.app/Contents/MacOS/$${TARGET}; \
	install_name_tool -change Frameworks/QtCore.framework/Versions/Current/QtCore @executable_path/../Frameworks/QtCore.framework/Versions/4.0/QtCore $${DESTDIR}/$${TARGET}.app/Contents/Frameworks/Qt3Support.framework/Versions/4.0/Qt3Support; \
	install_name_tool -change Frameworks/QtGui.framework/Versions/Current/QtGui @executable_path/../Frameworks/QtGui.framework/Versions/4.0/QtGui $${DESTDIR}/$${TARGET}.app/Contents/Frameworks/Qt3Support.framework/Versions/4.0/Qt3Support; \
	install_name_tool -change Frameworks/QtCore.framework/Versions/Current/QtCore @executable_path/../Frameworks/QtCore.framework/Versions/4.0/QtCore $${DESTDIR}/$${TARGET}.app/Contents/Frameworks/Qt3Support.framework/Versions/4.0/Qt3Support; "
}

# finis