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Location: EI/VirtualLeaf/src/TutorialCode/Tutorial1A/tutorial1A.cpp

Roeland Merks
In response to referee's comment

"I am also afraid that the ‘snapshot’ and the ‘Export cell data’ functions do not seem to work very well in my hands, could the program be changed so that the correct file extension (.jpg, .tif, .txt, .dat, .xls, .csv…) is given automatically."

I corrected the "exportCellData()" function in canvas.cpp. It did not actually call exportCellData(filename) after the user entered a filename (logic after calling QMessageBox was incorrect).

--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
changed src/canvas.cpp
/*
 *
 *  This file is part of the Virtual Leaf.
 *
 *  The Virtual Leaf is free software: you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation, either version 3 of the License, or
 *  (at your option) any later version.
 *
 *  The Virtual Leaf is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License
 *  along with the Virtual Leaf.  If not, see <http://www.gnu.org/licenses/>.
 *
 *  Copyright 2010 Roeland Merks.
 *
 */

#include <QObject>
#include <QtGui>

#include "simplugin.h"

#include "parameter.h"

#include "wallbase.h"
#include "cellbase.h"
#include "tutorial1A.h"

static const std::string _module_id("$Id$");

QString Tutorial1A::ModelID(void) {
  // specify the name of your model here
  return QString( "1A: Cell growth" );
}

// return the number of chemicals your model uses
int Tutorial1A::NChem(void) { return 0; }

// To be executed after cell division
void Tutorial1A::OnDivide(ParentInfo *parent_info, CellBase *daughter1, CellBase *daughter2) {
  // rules to be executed after cell division go here
  // (e.g., cell differentiation rules)
}

void Tutorial1A::SetCellColor(CellBase *c, QColor *color) { 
  // add cell coloring rules here

}

void Tutorial1A::CellHouseKeeping(CellBase *c) {
  // add cell behavioral rules here
	c->EnlargeTargetArea(par->cell_expansion_rate);
}

void Tutorial1A::CelltoCellTransport(Wall *w, double *dchem_c1, double *dchem_c2) {
  // add biochemical transport rules here
}
void Tutorial1A::WallDynamics(Wall *w, double *dw1, double *dw2) {
  // add biochemical networks for reactions occuring at walls here
}
void Tutorial1A::CellDynamics(CellBase *c, double *dchem) { 
  // add biochemical networks for intracellular reactions here
}


Q_EXPORT_PLUGIN2(tutorial1A, Tutorial1A)