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Location: EI/VirtualLeaf/lib/libxml2/include/libxml/xmlautomata.h - annotation
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In response to referee's comment:
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
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* Summary: API to build regexp automata
* Description: the API to build regexp automata
*
* Copy: See Copyright for the status of this software.
*
* Author: Daniel Veillard
*/
#ifndef __XML_AUTOMATA_H__
#define __XML_AUTOMATA_H__
#include <libxml/xmlversion.h>
#include <libxml/tree.h>
#ifdef LIBXML_REGEXP_ENABLED
#ifdef LIBXML_AUTOMATA_ENABLED
#include <libxml/xmlregexp.h>
#ifdef __cplusplus
extern "C" {
#endif
/**
* xmlAutomataPtr:
*
* A libxml automata description, It can be compiled into a regexp
*/
typedef struct _xmlAutomata xmlAutomata;
typedef xmlAutomata *xmlAutomataPtr;
/**
* xmlAutomataStatePtr:
*
* A state int the automata description,
*/
typedef struct _xmlAutomataState xmlAutomataState;
typedef xmlAutomataState *xmlAutomataStatePtr;
/*
* Building API
*/
XMLPUBFUN xmlAutomataPtr XMLCALL
xmlNewAutomata (void);
XMLPUBFUN void XMLCALL
xmlFreeAutomata (xmlAutomataPtr am);
XMLPUBFUN xmlAutomataStatePtr XMLCALL
xmlAutomataGetInitState (xmlAutomataPtr am);
XMLPUBFUN int XMLCALL
xmlAutomataSetFinalState (xmlAutomataPtr am,
xmlAutomataStatePtr state);
XMLPUBFUN xmlAutomataStatePtr XMLCALL
xmlAutomataNewState (xmlAutomataPtr am);
XMLPUBFUN xmlAutomataStatePtr XMLCALL
xmlAutomataNewTransition (xmlAutomataPtr am,
xmlAutomataStatePtr from,
xmlAutomataStatePtr to,
const xmlChar *token,
void *data);
XMLPUBFUN xmlAutomataStatePtr XMLCALL
xmlAutomataNewTransition2 (xmlAutomataPtr am,
xmlAutomataStatePtr from,
xmlAutomataStatePtr to,
const xmlChar *token,
const xmlChar *token2,
void *data);
XMLPUBFUN xmlAutomataStatePtr XMLCALL
xmlAutomataNewNegTrans (xmlAutomataPtr am,
xmlAutomataStatePtr from,
xmlAutomataStatePtr to,
const xmlChar *token,
const xmlChar *token2,
void *data);
XMLPUBFUN xmlAutomataStatePtr XMLCALL
xmlAutomataNewCountTrans (xmlAutomataPtr am,
xmlAutomataStatePtr from,
xmlAutomataStatePtr to,
const xmlChar *token,
int min,
int max,
void *data);
XMLPUBFUN xmlAutomataStatePtr XMLCALL
xmlAutomataNewCountTrans2 (xmlAutomataPtr am,
xmlAutomataStatePtr from,
xmlAutomataStatePtr to,
const xmlChar *token,
const xmlChar *token2,
int min,
int max,
void *data);
XMLPUBFUN xmlAutomataStatePtr XMLCALL
xmlAutomataNewOnceTrans (xmlAutomataPtr am,
xmlAutomataStatePtr from,
xmlAutomataStatePtr to,
const xmlChar *token,
int min,
int max,
void *data);
XMLPUBFUN xmlAutomataStatePtr XMLCALL
xmlAutomataNewOnceTrans2 (xmlAutomataPtr am,
xmlAutomataStatePtr from,
xmlAutomataStatePtr to,
const xmlChar *token,
const xmlChar *token2,
int min,
int max,
void *data);
XMLPUBFUN xmlAutomataStatePtr XMLCALL
xmlAutomataNewAllTrans (xmlAutomataPtr am,
xmlAutomataStatePtr from,
xmlAutomataStatePtr to,
int lax);
XMLPUBFUN xmlAutomataStatePtr XMLCALL
xmlAutomataNewEpsilon (xmlAutomataPtr am,
xmlAutomataStatePtr from,
xmlAutomataStatePtr to);
XMLPUBFUN xmlAutomataStatePtr XMLCALL
xmlAutomataNewCountedTrans (xmlAutomataPtr am,
xmlAutomataStatePtr from,
xmlAutomataStatePtr to,
int counter);
XMLPUBFUN xmlAutomataStatePtr XMLCALL
xmlAutomataNewCounterTrans (xmlAutomataPtr am,
xmlAutomataStatePtr from,
xmlAutomataStatePtr to,
int counter);
XMLPUBFUN int XMLCALL
xmlAutomataNewCounter (xmlAutomataPtr am,
int min,
int max);
XMLPUBFUN xmlRegexpPtr XMLCALL
xmlAutomataCompile (xmlAutomataPtr am);
XMLPUBFUN int XMLCALL
xmlAutomataIsDeterminist (xmlAutomataPtr am);
#ifdef __cplusplus
}
#endif
#endif /* LIBXML_AUTOMATA_ENABLED */
#endif /* LIBXML_REGEXP_ENABLED */
#endif /* __XML_AUTOMATA_H__ */
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