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Location: EI/VirtualLeaf/lib/libxml2/include/libxml/xmlautomata.h

6bcb69712a0e 3.9 KiB text/x-chdr Show Annotation Show as Raw Download as Raw
Roeland Merks
In response to referee's comment:

"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in

rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked

automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."

I made the following changes:

- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.


--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
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/*
 * Summary: API to build regexp automata
 * Description: the API to build regexp automata
 *
 * Copy: See Copyright for the status of this software.
 *
 * Author: Daniel Veillard
 */

#ifndef __XML_AUTOMATA_H__
#define __XML_AUTOMATA_H__

#include <libxml/xmlversion.h>
#include <libxml/tree.h>

#ifdef LIBXML_REGEXP_ENABLED
#ifdef LIBXML_AUTOMATA_ENABLED
#include <libxml/xmlregexp.h>

#ifdef __cplusplus
extern "C" {
#endif

/**
 * xmlAutomataPtr:
 *
 * A libxml automata description, It can be compiled into a regexp
 */
typedef struct _xmlAutomata xmlAutomata;
typedef xmlAutomata *xmlAutomataPtr;

/**
 * xmlAutomataStatePtr:
 *
 * A state int the automata description,
 */
typedef struct _xmlAutomataState xmlAutomataState;
typedef xmlAutomataState *xmlAutomataStatePtr;

/*
 * Building API
 */
XMLPUBFUN xmlAutomataPtr XMLCALL		
		    xmlNewAutomata		(void);
XMLPUBFUN void XMLCALL			
		    xmlFreeAutomata		(xmlAutomataPtr am);

XMLPUBFUN xmlAutomataStatePtr XMLCALL	
		    xmlAutomataGetInitState	(xmlAutomataPtr am);
XMLPUBFUN int XMLCALL			
		    xmlAutomataSetFinalState	(xmlAutomataPtr am,
						 xmlAutomataStatePtr state);
XMLPUBFUN xmlAutomataStatePtr XMLCALL	
		    xmlAutomataNewState		(xmlAutomataPtr am);
XMLPUBFUN xmlAutomataStatePtr XMLCALL	
		    xmlAutomataNewTransition	(xmlAutomataPtr am,
						 xmlAutomataStatePtr from,
						 xmlAutomataStatePtr to,
						 const xmlChar *token,
						 void *data);
XMLPUBFUN xmlAutomataStatePtr XMLCALL	
		    xmlAutomataNewTransition2	(xmlAutomataPtr am,
						 xmlAutomataStatePtr from,
						 xmlAutomataStatePtr to,
						 const xmlChar *token,
						 const xmlChar *token2,
						 void *data);
XMLPUBFUN xmlAutomataStatePtr XMLCALL
                    xmlAutomataNewNegTrans	(xmlAutomataPtr am,
						 xmlAutomataStatePtr from,
						 xmlAutomataStatePtr to,
						 const xmlChar *token,
						 const xmlChar *token2,
						 void *data);

XMLPUBFUN xmlAutomataStatePtr XMLCALL	
		    xmlAutomataNewCountTrans	(xmlAutomataPtr am,
						 xmlAutomataStatePtr from,
						 xmlAutomataStatePtr to,
						 const xmlChar *token,
						 int min,
						 int max,
						 void *data);
XMLPUBFUN xmlAutomataStatePtr XMLCALL	
		    xmlAutomataNewCountTrans2	(xmlAutomataPtr am,
						 xmlAutomataStatePtr from,
						 xmlAutomataStatePtr to,
						 const xmlChar *token,
						 const xmlChar *token2,
						 int min,
						 int max,
						 void *data);
XMLPUBFUN xmlAutomataStatePtr XMLCALL	
		    xmlAutomataNewOnceTrans	(xmlAutomataPtr am,
						 xmlAutomataStatePtr from,
						 xmlAutomataStatePtr to,
						 const xmlChar *token,
						 int min,
						 int max,
						 void *data);
XMLPUBFUN xmlAutomataStatePtr XMLCALL
		    xmlAutomataNewOnceTrans2	(xmlAutomataPtr am, 
						 xmlAutomataStatePtr from,
						 xmlAutomataStatePtr to, 
						 const xmlChar *token,
						 const xmlChar *token2,
						 int min, 
						 int max, 
						 void *data);
XMLPUBFUN xmlAutomataStatePtr XMLCALL	
		    xmlAutomataNewAllTrans	(xmlAutomataPtr am,
						 xmlAutomataStatePtr from,
						 xmlAutomataStatePtr to,
						 int lax);
XMLPUBFUN xmlAutomataStatePtr XMLCALL	
		    xmlAutomataNewEpsilon	(xmlAutomataPtr am,
						 xmlAutomataStatePtr from,
						 xmlAutomataStatePtr to);
XMLPUBFUN xmlAutomataStatePtr XMLCALL	
		    xmlAutomataNewCountedTrans	(xmlAutomataPtr am,
						 xmlAutomataStatePtr from,
						 xmlAutomataStatePtr to,
						 int counter);
XMLPUBFUN xmlAutomataStatePtr XMLCALL	
		    xmlAutomataNewCounterTrans	(xmlAutomataPtr am,
						 xmlAutomataStatePtr from,
						 xmlAutomataStatePtr to,
						 int counter);
XMLPUBFUN int XMLCALL			
		    xmlAutomataNewCounter	(xmlAutomataPtr am,
						 int min,
						 int max);

XMLPUBFUN xmlRegexpPtr XMLCALL		
		    xmlAutomataCompile		(xmlAutomataPtr am);
XMLPUBFUN int XMLCALL	    		
		    xmlAutomataIsDeterminist	(xmlAutomataPtr am);

#ifdef __cplusplus
}
#endif 

#endif /* LIBXML_AUTOMATA_ENABLED */
#endif /* LIBXML_REGEXP_ENABLED */

#endif /* __XML_AUTOMATA_H__ */
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