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Location: EI/VirtualLeaf/lib/libxml2/include/libxml/xinclude.h
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In response to referee's comment:
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in
rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked
automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."
I made the following changes:
- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.
--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 | /*
* Summary: implementation of XInclude
* Description: API to handle XInclude processing,
* implements the
* World Wide Web Consortium Last Call Working Draft 10 November 2003
* http://www.w3.org/TR/2003/WD-xinclude-20031110
*
* Copy: See Copyright for the status of this software.
*
* Author: Daniel Veillard
*/
#ifndef __XML_XINCLUDE_H__
#define __XML_XINCLUDE_H__
#include <libxml/xmlversion.h>
#include <libxml/tree.h>
#ifdef LIBXML_XINCLUDE_ENABLED
#ifdef __cplusplus
extern "C" {
#endif
/**
* XINCLUDE_NS:
*
* Macro defining the Xinclude namespace: http://www.w3.org/2003/XInclude
*/
#define XINCLUDE_NS (const xmlChar *) "http://www.w3.org/2003/XInclude"
/**
* XINCLUDE_OLD_NS:
*
* Macro defining the draft Xinclude namespace: http://www.w3.org/2001/XInclude
*/
#define XINCLUDE_OLD_NS (const xmlChar *) "http://www.w3.org/2001/XInclude"
/**
* XINCLUDE_NODE:
*
* Macro defining "include"
*/
#define XINCLUDE_NODE (const xmlChar *) "include"
/**
* XINCLUDE_FALLBACK:
*
* Macro defining "fallback"
*/
#define XINCLUDE_FALLBACK (const xmlChar *) "fallback"
/**
* XINCLUDE_HREF:
*
* Macro defining "href"
*/
#define XINCLUDE_HREF (const xmlChar *) "href"
/**
* XINCLUDE_PARSE:
*
* Macro defining "parse"
*/
#define XINCLUDE_PARSE (const xmlChar *) "parse"
/**
* XINCLUDE_PARSE_XML:
*
* Macro defining "xml"
*/
#define XINCLUDE_PARSE_XML (const xmlChar *) "xml"
/**
* XINCLUDE_PARSE_TEXT:
*
* Macro defining "text"
*/
#define XINCLUDE_PARSE_TEXT (const xmlChar *) "text"
/**
* XINCLUDE_PARSE_ENCODING:
*
* Macro defining "encoding"
*/
#define XINCLUDE_PARSE_ENCODING (const xmlChar *) "encoding"
/**
* XINCLUDE_PARSE_XPOINTER:
*
* Macro defining "xpointer"
*/
#define XINCLUDE_PARSE_XPOINTER (const xmlChar *) "xpointer"
typedef struct _xmlXIncludeCtxt xmlXIncludeCtxt;
typedef xmlXIncludeCtxt *xmlXIncludeCtxtPtr;
/*
* standalone processing
*/
XMLPUBFUN int XMLCALL
xmlXIncludeProcess (xmlDocPtr doc);
XMLPUBFUN int XMLCALL
xmlXIncludeProcessFlags (xmlDocPtr doc,
int flags);
XMLPUBFUN int XMLCALL
xmlXIncludeProcessFlagsData(xmlDocPtr doc,
int flags,
void *data);
XMLPUBFUN int XMLCALL
xmlXIncludeProcessTreeFlagsData(xmlNodePtr tree,
int flags,
void *data);
XMLPUBFUN int XMLCALL
xmlXIncludeProcessTree (xmlNodePtr tree);
XMLPUBFUN int XMLCALL
xmlXIncludeProcessTreeFlags(xmlNodePtr tree,
int flags);
/*
* contextual processing
*/
XMLPUBFUN xmlXIncludeCtxtPtr XMLCALL
xmlXIncludeNewContext (xmlDocPtr doc);
XMLPUBFUN int XMLCALL
xmlXIncludeSetFlags (xmlXIncludeCtxtPtr ctxt,
int flags);
XMLPUBFUN void XMLCALL
xmlXIncludeFreeContext (xmlXIncludeCtxtPtr ctxt);
XMLPUBFUN int XMLCALL
xmlXIncludeProcessNode (xmlXIncludeCtxtPtr ctxt,
xmlNodePtr tree);
#ifdef __cplusplus
}
#endif
#endif /* LIBXML_XINCLUDE_ENABLED */
#endif /* __XML_XINCLUDE_H__ */
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