Files @ 6bcb69712a0e
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Location: EI/VirtualLeaf/src/data_plot.h

Roeland Merks
In response to referee's comment:

"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in

rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked

automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."

I made the following changes:

- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.


--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h
/*
 *
 *  $Id$
 *
 *  This file is part of the Virtual Leaf.
 *
 *  The Virtual Leaf is free software: you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation, either version 3 of the License, or
 *  (at your option) any later version.
 *
 *  The Virtual Leaf is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License
 *  along with the Virtual Leaf.  If not, see <http://www.gnu.org/licenses/>.
 *
 *  Copyright 2010 Roeland Merks.
 *
 */

#ifndef _DATA_PLOT_H_
#define _DATA_PLOT_H_

#include <QDialog>
#include <qwt_plot.h>
#include <iostream>
#include <QFile>
#include <QTextStream>
#include <qwt_plot_curve.h>
#include "curvecolors.h"

const int PLOT_SIZE = 1000; 

class DataPlot : public QwtPlot
{
  Q_OBJECT

 public:
  DataPlot(QWidget *parent, const QString title, const QStringList curvenames);
  virtual ~DataPlot(void);
  public slots:
  void AddValue(double t, double *x);

 private:
  void alignScales();

  double *d_t; 
  double **d_x; 

  int d_interval; // timer in ms
  int d_timerId;

  QwtPlotCurve *curves;
  int data_pos;
  int ncurves;

  CurveColors curvecolors;

 protected:
  // to write contents of DataPlot to a file
  QFile *datfile;
  QTextStream datstream;
};

class PlotDialog : public QDialog {

  Q_OBJECT
    public:
  PlotDialog(QWidget *parent, const QString title, const QStringList curvenames);
  ~PlotDialog(void);
  public slots:
  void AddValue(double t, double *x) {
    //std::cerr << "AddValue receives: " << t << ", " << y << ", " << z << std::endl;
    plot->AddValue(t,x);
  }
 private:
  DataPlot *plot;
};

#endif

/* finis */