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Roeland Merks

In response to referee's comment:

"However, (although it is probably not important for model developers), I was
still unable to load the model ‘Meinhardt 1976 with growth’ example from the
‘Models’ drop down menu, I got the ‘Fatal error’ message ‘stepwise underflow in

rkqs, with h=0.000000 and htry = 0.100000’. The model did work when I selected
the Meinhardt model in both the Models and the File -> Read leaf menus together,
it would be preferable if the models loaded from the Models menu worked

automatically. I am not sure that the update referred to in the author’s
response permits the loading of ‘My First Model in Virtual Leaf’ from the
‘Models’ drop down menu; I only got a cell that wiggled."

I made the following changes:

- meinhardt_plugin now reads "meinhardt_init.xml" by default
- changed the name of 'My First Model in Virtual Leaf’ to '0: Empty model template (does nothing)' to make it clear that the wiggle cell is the intended behavior for this model example.
- Added default parameter files for Tutorial1A-D and Tutorial2 to prevent variable behavior depending on the last parameter settings used.

--
user: Roeland Merks <roeland.merks@cwi.nl>
branch 'default'
added data/leaves/tutorial1_init.xml
added data/leaves/tutorial2_init.xml
changed data/leaves/auxin_growth.xml
changed data/leaves/meinhardt_init.xml
changed src/TutorialCode/Tutorial0/tutorial0.cpp
changed src/TutorialCode/Tutorial1A/tutorial1A.h
changed src/TutorialCode/Tutorial1B/tutorial1B.h
changed src/TutorialCode/Tutorial1C/tutorial1C.h
changed src/TutorialCode/Tutorial1D/tutorial1D.h
changed src/TutorialCode/Tutorial2/tutorial2.h
changed src/build_models/meinhardtplugin.h

#
#  $Id$
#
#  This file is part of the Virtual Leaf.
#
#  The Virtual Leaf is free software: you can redistribute it and/or modify
#  it under the terms of the GNU General Public License as published by
#  the Free Software Foundation, either version 3 of the License, or
#  (at your option) any later version.
#
#  The Virtual Leaf is distributed in the hope that it will be useful,
#  but WITHOUT ANY WARRANTY; without even the implied warranty of
#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#  GNU General Public License for more details.
#
#  You should have received a copy of the GNU General Public License
#  along with the Virtual Leaf.  If not, see <http://www.gnu.org/licenses/>.
#
#  Copyright 2010 Roeland Merks.
#

CONFIG += release
CONFIG -= debug
CONFIG += staticlib

QMAKE_CXXFLAGS += -fexceptions
QMAKE_CXXFLAGS += -Wall
QMAKE_CXXFLAGS += -Wno-write-strings
QMAKE_CXXFLAGS += -Wno-unused-parameter
win32:QMAKE_CXXFLAGS -= O2
QMAKE_CXXFLAGS_DEBUG += -g3
QMAKE_CXXFLAGS_DEBUG += -DQDEBUG
QMAKE_CXXFLAGS_DEBUG -= -finstrument-functions

DEFINES = QTGRAPHICS # VLEAFPLUGIN
DESTDIR = ../lib
LIBDIR = ../lib
PARTMPL = VirtualLeafpar.tmpl
QT += qt3support
TARGET = vleaf
TEMPLATE = lib

HEADERS = \
 cellbase.h \
 matrix.h \
 output.h \
 parameter.h \
 parse.h \
 random.h \
 simplugin.h \
 UniqueMessage.h \
 vector.h \
 wallbase.h \
 warning.h

SOURCES = \
 cellbase.cpp \
 matrix.cpp \
 output.cpp \
 parameter.cpp \
 parse.cpp \
 random.cpp \
 simplugin.cpp \
 UniqueMessage.cpp \
 vector.cpp \
 wallbase.cpp \
 warning.cpp

unix {
 QMAKE_CXXFLAGS += -fPIC -I/usr/include/libxml2
 QMAKE_LFLAGS += -fPIC
 LIBS += -lxml2 -lz -lm 
}

win32 {
 LIBXML2DIR = $${LIBDIR}\libxml2
 LIBICONVDIR = $${LIBDIR}\libiconv
 LIBZDIR = $${LIBDIR}\libz
 QMAKE_CXXFLAGS += -DLIBXML_STATIC
 QMAKE_CXXFLAGS += -I$${LIBXML2DIR}\include -I$${LIBICONVDIR}\include -I$${LIBZDIR}\include
}

#