Files @ b7792cb187f7
Branch filter:

Location: MD/arcos/input/example_user_continue.cfg

greta
Edited file README via RhodeCode
  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
name = "default";
param = ( 
  {
    type = "string";
    name = "prog_id";
    comment = "An identification name for this run";
    value = "example";
  }, 
  {
    type = "string";
    name = "output_dir";
    comment = "Output directory";
    value = "output";
  }, 
  {
    type = "string";
    name = "kin_input";
    comment = "Kinetics input file";
    value = "input/kinetic_example.cfg";
  }, 
  {
    type = "int";
    name = "restart";
    comment = "If restart is 1 (TRUE), the simulation will continue with data from a previous run";
    value = 0;
  }, 
  {
    type = "string";
    name = "load_file";
    comment = "If restart is TRUE, the name of the file with data from previous run, otherwise empty";
    value = "";
  }, 
  {
    type = "double";
    name = "output_dt";
    comment = "Time interval for output to be written to disk";
    value = 0.1;
  }, 
  {
    type = "int";
    name = "pois_output";
    comment = "Output of the Poisson grids, including the potential?";
    value = 0;
  }, 
  {
    type = "int";
    name = "cdr_output_margin";
    comment = "Margin outside the grids in the output of the cdr equation";
    value = 0;
  }, 
  {
    type = "int";
    name = "pois_output_margin";
    comment = "Margin outside the grids in the output of the poisson equation";
    value = 1;
  }, 
  {
    type = "double";
    name = "warn_min_timestep";
    comment = "If the time steps are smaller than this number, the program issues a warning";
    value = 1e-06;
  }, 
  {
    type = "int";
    name = "max_disk_space_mb";
    comment = "Maximum disk space, in Mb, to use";
    value = 1048576;
  }, 
  {
    type = "int";
    name = "gridpoints_r";
    comment = "Number of R gridpoints at level 0";
    value = 600;
  }, 
  {
    type = "int";
    name = "gridpoints_z";
    comment = "Number of Z gridpoints at level 0";
    value = 600;
  }, 
  {
    type = "int";
    name = "max_ntheta";
    comment = "Number of azimuthal gridcells and modes";
    value = 1;
  }, 
  {
    type = "double";
    name = "start_t";
    comment = "Initial time";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "end_t";
    comment = "End time";
    value = 0.6;
  }, 
  {
    type = "double";
    name = "attempt_dt";
    comment = "Attempted timestep.  The actual timestep may be larger";
    value = 50.0;
  }, 
  {
    type = "int";
    name = "extra_pois_levels";
    comment = "Extra levels for the Poisson solver";
    value = 2;
  }, 
  {
    type = "int";
    name = "max_levels";
    comment = "Maximum level of refinement. Use a big number here";
    value = 64;
  }, 
  {
    type = "double";
    name = "pois_max_error";
    comment = "Error threshold that leads to refinement in the Poisson code.";
    value = 0.001;
  }, 
  {
    type = "int";
    name = "pois_max_level";
    comment = "Maximum level of refinement in the Poisson equation.";
    value = 3;
  }, 
  {
    type = "int";
    name = "extra_photo_levels";
    comment = "Extra levels for the photo-ionization solver";
    value = -1;
  }, 
  {
    type = "int";
    name = "photo_max_level";
    comment = "Maximum level of refinement in the photo-ionization solver.";
    value = 4;
  }, 
  {
    type = "double";
    name = "photo_max_error";
    comment = "Error threshold that leads to refinement in the photo-ionization code.";
    value = 0.01;
  }, 
  {
    type = "int";
    name = "photo_bnd_right";
    comment = "Photo-ionization boundary condition at r = L_r.  1 for Hom. Neumann, -1 for Hom. Dirichlet";
    value = -1;
  }, 
  {
    type = "int";
    name = "photo_bnd_bottom";
    comment = "Photo-ionization boundary condition at z = 0.  1 for Hom. Neumann, -1 for Hom. Dirichlet";
    value = -1;
  }, 
  {
    type = "int";
    name = "photo_bnd_top";
    comment = "Photo-ionization boundary condition at z = L_z.  1 for Hom. Neumann, -1 for Hom. Dirichlet";
    value = -1;
  }, 
  {
    type = "int";
    name = "extra_photo_levels_2";
    comment = "Extra levels for the photo-ionization solver";
    value = -1;
  }, 
  {
    type = "int";
    name = "photo_max_level_2";
    comment = "Maximum level of refinement in the photo-ionization solver.";
    value = 4;
  }, 
  {
    type = "double";
    name = "photo_max_error_2";
    comment = "Error threshold that leads to refinement in the photo-ionization code.";
    value = 0.01;
  }, 
  {
    type = "int";
    name = "photo_bnd_right_2";
    comment = "Photo-ionization boundary condition at r = L_r.  1 for Hom. Neumann, -1 for Hom. Dirichlet";
    value = -1;
  }, 
  {
    type = "int";
    name = "photo_bnd_bottom_2";
    comment = "Photo-ionization boundary condition at z = 0.  1 for Hom. Neumann, -1 for Hom. Dirichlet";
    value = -1;
  }, 
  {
    type = "int";
    name = "photo_bnd_top_2";
    comment = "Photo-ionization boundary condition at z = L_z.  1 for Hom. Neumann, -1 for Hom. Dirichlet";
    value = -1;
  }, 
  {
    type = "int";
    name = "cdr_bnd_bottom";
    comment = "Particles boundary condition at z = 0.  1 for Hom. Neumann, -1 for Hom. Dirichlet";
    value = 1;
  }, 
  {
    type = "int";
    name = "cdr_bnd_top";
    comment = "Particles boundary condition at z = L_z.  1 for Hom. Neumann, -1 for Hom. Dirichlet";
    value = 1;
  }, 
  {
    type = "int";
    name = "cdr_bnd_right";
    comment = "Particles boundary condition at r = L_r.  1 for Hom. Neumann, -1 for Hom. Dirichlet";
    value = 1;
  }, 
  {
    type = "int";
    name = "pois_bnd_right";
    comment = "Potential boundary condition at r = L_r.  1 for Hom. Neumann, -1 for Hom. Dirichlet";
    value = -1;
  }, 
  {
    type = "int";
    name = "pois_bnd_bottom";
    comment = "Potential boundary condition at z = 0.  1 for Hom. Neumann, -1 for Hom. Dirichlet";
    value = -1;
  }, 
  {
    type = "int";
    name = "pois_bnd_top";
    comment = "Potential boundary condition at z = L_z.  1 for Hom. Neumann, -1 for Hom. Dirichlet";
    value = -1;
  }, 
  {
    type = "double";
    name = "nu_a";
    comment = "Maximum advection Courant number";
    value = 0.2;
  }, 
  {
    type = "double";
    name = "nu_d";
    comment = "Maximum diffusion Courant number";
    value = 0.2;
  }, 
  {
    type = "double";
    name = "nu_rt";
    comment = "Maximum ratio of dt/relaxation time";
    value = 0.2;
  }, 
  {
    type = "double";
    name = "nu_f";
    comment = "Maximum ratio of change of the densities (set to a very large number to ignore)";
    value = 1e+20;
  }, 
  {
    type = "double";
    name = "ref_threshold_eabs";
    comment = "Refinement threshold for the electric field";
    value = 0.2;
  }, 
  {
    type = "int";
    name = "ref_level_eabs";
    comment = "Maximum refinement level reached through ref_threshold_eabs";
    value = 4;
  }, 
  {
    type = "double";
    name = "ref_threshold_charge";
    comment = "Refinement threshold for the curvature of the charge";
    value = 0.004;
  }, 
  {
    type = "double";
    name = "ref_threshold_dens";
    comment = "Refinement threshold for the curvature of the densities";
    value = 0.004;
  }, 
  {
    type = "double";
    name = "ref_threshold_edge";
    comment = "Refinement threshold for the densities in the leading edge";
    value = 10000.0;
  }, 
  {
    type = "int";
    name = "cdr_brick_dr";
    comment = "r-length of the minimal refinement area in the cdr equation";
    value = 8;
  }, 
  {
    type = "int";
    name = "cdr_brick_dz";
    comment = "z-length of the minimal refinement area in the cdr equation";
    value = 8;
  }, 
  {
    type = "int";
    name = "cdr_max_level";
    comment = "Maximum level of refinement in the Fluid equation.";
    value = 3;
  }, 
  {
    type = "int";
    name = "cdr_interp_in";
    comment = "Interpolation method for the grid interior (0=zero_masses, 1=quadratic_masses [default], 2=wackers_masses, 3=quadlog";
    value = 1;
  }, 
  {
    type = "int";
    name = "cdr_interp_bnd";
    comment = "Interpolation method for the grid boundaries (0=zero_masses, 1=quadratic_masses [default], 2=wackers_masses, 3=quadlog";
    value = 1;
  }, 
  {
    type = "double";
    name = "L_r";
    comment = "Length in r of the complete domain";
    value = 13044.0;
  }, 
  {
    type = "double";
    name = "L_z";
    comment = "Length in z of the complete domain";
    value = 13044.0;
  }, 
  {
    type = "double";
    name = "diffusion_coeff";
    comment = "Isotropic difussion coefficient";
    value = 0.1;
  }, 
  {
    type = "int";
    name = "has_photoionization";
    comment = "Whether the code includes photoionization or not";
    value = 1;
  }, 
  {
    type = "string";
    name = "photoionization_file";
    comment = "The name of a file from which we can read the photoionization parameters";
    value = "input/air760torr.photo";
  }, 
  {
    type = "double";
    name = "attachment_rate";
    comment = "Rate of dissociative attachment";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "attachment_E0";
    comment = "E0 in the exp(-E0/E) factor in the attachment expression.";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "E0_x";
    comment = "x component of the external electric field";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "E0_y";
    comment = "y component of the external electric field";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "E0_z";
    comment = "z component of the external electric field";
    value = -0.06;
  }, 
  {
    type = "double";
    name = "rise_time";
    comment = "Rise time of the electric field (0 for instantaneous rise)";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "off_time";
    comment = "Time to switch off the electric field (0.0 means never)";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "seed_sigma_x";
    comment = "x width of the initial seed";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "seed_sigma_y";
    comment = "y width of the initial seed";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "seed_sigma_z";
    comment = "z width of the initial seed";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "seed_N";
    comment = "Number of electrons in the initial seed";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "background_ionization";
    comment = "Initial at z=0 densities of electrons and ions";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "background_increase_length";
    comment = "Length of exponential increase of the pre-ionization (for atmospherical models)";
    value = 0.0;
  }, 
  {
    type = "int";
    name = "pois_inhom";
    comment = "Use the point-plane geometry?";
    value = 1;
  }, 
  {
    type = "int";
    name = "pois_inhom_reflections";
    comment = "Number of mirror charges to use";
    value = 4;
  }, 
  {
    type = "double";
    name = "needle_length";
    comment = "Length of the needle";
    value = 2500.0;
  }, 
  {
    type = "double";
    name = "needle_radius";
    comment = "Radius of the needle";
    value = 400.0;
  }, 
  {
    type = "double";
    name = "pois_inhom_fixed_q";
    comment = "If nonzero, the charge is fixed, not floating (simulation of charged clouds close to the earth surface)";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "constant_source";
    comment = "Constant ionization rate";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "perturb_epsilon";
    comment = "Initial perturbation to the axisymmetric configuration";
    value = 0.0;
  }, 
  {
    type = "int";
    name = "perturb_max_k";
    comment = "Perturb only modes up to perturb_max_k (large number to perturb all)";
    value = 1024;
  }, 
  {
    type = "int";
    name = "sprite_module";
    comment = "1 if the sprite module is activated, 0 otherwise";
    value = 0;
  }, 
  {
    type = "double";
    name = "dens_decay_len";
    comment = "Lenght of exponential decay of the density w/r to altitude";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "sprite_dens_0";
    comment = "Density at z = 0";
    value = 0.0;
  }, 
  {
    type = "double";
    name = "sprite_dens_q";
    comment = "Quenching density";
    value = 0.0;
  }, 
  {
    type = "int";
    name = "sprite_sign";
    comment = "Sign of the sprite head that we are following (the other will not be reliable";
    value = -1;
  } );